Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0849
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   144   1e-35
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   1.8  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   2.4  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  144 bits (349), Expect = 1e-35
 Identities = 64/101 (63%), Positives = 83/101 (82%)
 Frame = +1

Query: 205 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 384
           K +   E  L     + ++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 385 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI 507
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTAL 147



 Score = 86.2 bits (204), Expect = 5e-18
 Identities = 36/55 (65%), Positives = 45/55 (81%)
 Frame = +3

Query: 516 HTVPCXVTGKCGSVTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGT 680
           HTVP  V+GKCGSVT RL+PAP G  +V+APV K+ LQ+AG++DCYT +RGST T
Sbjct: 151 HTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKT 205



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 25/37 (67%), Positives = 33/37 (89%)
 Frame = +2

Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKE 64


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 257 SRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 364
           SR+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 349 SRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 330 LFLYRHDLKNLIIQGRAEEEINDLESLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSF 157
           L +Y   L+NL+ QG+A E +N ++ +          +  I  S  +RP   + T SF
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIKRMSHNGPFPTQQTFLIVLSLCKRPKFYSYTKSF 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,405
Number of Sequences: 5004
Number of extensions: 60918
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)