Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0849
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 146 2e-35
07_01_0756 + 5819367-5820038,5820847-5821005 141 5e-34
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 70 3e-12
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.4
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 28 7.6
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 146 bits (353), Expect = 2e-35
Identities = 67/77 (87%), Positives = 72/77 (93%)
Frame = +1
Query: 277 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 456
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 457 AKLSVLPVRRGYWGNKI 507
AKLSV+PVRRGYWGNKI
Sbjct: 141 AKLSVVPVRRGYWGNKI 157
Score = 88.6 bits (210), Expect = 5e-18
Identities = 38/55 (69%), Positives = 47/55 (85%)
Frame = +3
Query: 516 HTVPCXVTGKCGSVTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGT 680
HTVPC VTGKCGSVT R++PAP G+ IV+A VPKK+LQ AG++D +TS+RGST T
Sbjct: 161 HTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKT 215
Score = 58.4 bits (135), Expect = 6e-09
Identities = 22/37 (59%), Positives = 33/37 (89%)
Frame = +2
Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+K+
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKE 74
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 141 bits (342), Expect = 5e-34
Identities = 65/77 (84%), Positives = 71/77 (92%)
Frame = +1
Query: 277 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 456
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 457 AKLSVLPVRRGYWGNKI 507
AKLSV+PVRRGYWGNKI
Sbjct: 144 AKLSVVPVRRGYWGNKI 160
Score = 90.2 bits (214), Expect = 2e-18
Identities = 39/57 (68%), Positives = 48/57 (84%)
Frame = +3
Query: 510 KXHTVPCXVTGKCGSVTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGT 680
K HTVPC VTGKCGSVT R++PAP G+ IV+A VPKK+LQ AG++D +TS+RGST T
Sbjct: 162 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKT 218
Score = 58.4 bits (135), Expect = 6e-09
Identities = 23/37 (62%), Positives = 33/37 (89%)
Frame = +2
Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++++++WVPVTKLGRLV+E KI K+E IYL SLP+K+
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKE 77
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 69.7 bits (163), Expect = 3e-12
Identities = 32/64 (50%), Positives = 44/64 (68%)
Frame = +3
Query: 507 RKXHTVPCXVTGKCGSVTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGTWE 686
RK HTV C V K GSVT R++ P G+ +V+ VPKK+L+ AG++D +TS+RGST T
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLS 105
Query: 687 ILLK 698
+K
Sbjct: 106 NFVK 109
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +1
Query: 364 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 459
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 292 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 471
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 472 LPV 480
+ V
Sbjct: 231 VTV 233
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 426 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 310
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>06_03_1496 - 30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 555 VTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGTWEILLK 698
VT + P PS I++ +P++L + D YT G E++ +
Sbjct: 1340 VTSKTSPCPSSLPILTKLLPQQLRETISSSDLYTKGDQQFGNGELIFE 1387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,931,693
Number of Sequences: 37544
Number of extensions: 444924
Number of successful extensions: 1051
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -