Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0849
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 141 6e-34
U28735-4|AAF99953.1| 488|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 29 5.2
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 29 5.2
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 29 5.2
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 29 5.2
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 28 6.8
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 141 bits (341), Expect = 6e-34
Identities = 69/86 (80%), Positives = 76/86 (88%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ FEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86 KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI 507
TAIRGAI+ AKL+V+PVRRGYWGNKI
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKI 170
Score = 97.9 bits (233), Expect = 7e-21
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3
Query: 516 HTVPCXVTGKCGSVTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGT 680
HTVPC VTGKC SV RLIPAP GT IVSAPVPKKLL MAG++DCYT+A+GST T
Sbjct: 174 HTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTAT 228
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/36 (69%), Positives = 28/36 (77%)
Frame = +2
Query: 149 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
E + EW PVTKLGRLV+E KI LE IYL SLPIK+
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKE 87
>U28735-4|AAF99953.1| 488|Caenorhabditis elegans Hypothetical
protein F48E3.2 protein.
Length = 488
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 622 SFLGTGADTIXVPLGAGISRXVTEPHLPVTLQGTVCXFLSCYPSNLFGLVELTA 461
S + A + +PL G SR V +++ G + F PS++ GL+ A
Sbjct: 102 SLIALFAIILKMPLMFGFSRLVMSLSAAISMNGLILLFQESSPSHMRGLISFNA 155
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 369 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 283
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 369 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 283
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +3
Query: 567 LIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGTWEILLKPHTLPLPRHMPXSLLN 746
L+P+P + S P P +L ++ +T WE + P P H L N
Sbjct: 459 LVPSPQSSSAFSRPPPTQLATQRRAPPLASTGLPATVRWEAIPPPKN-PNVGHNEPPLNN 517
Query: 747 CGRISP 764
GR P
Sbjct: 518 GGRAQP 523
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +3
Query: 567 LIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGTWEILLKPHTLPLPRHMPXSLLN 746
L+P+P + S P P +L ++ +T WE + P P H L N
Sbjct: 496 LVPSPQSSSAFSRPPPTQLATQRRAPPLASTGLPATVRWEAIPPPKN-PNVGHNEPPLNN 554
Query: 747 CGRISP 764
GR P
Sbjct: 555 GGRAQP 560
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +3
Query: 567 LIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGTWEILLKPHTLPLPRHMPXSLLN 746
L+P+P + S P P +L ++ +T WE + P P H L N
Sbjct: 496 LVPSPQSSSAFSRPPPTQLATQRRAPPLASTGLPATVRWEAIPPPKN-PNVGHNEPPLNN 554
Query: 747 CGRISP 764
GR P
Sbjct: 555 GGRAQP 560
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESI----YLFSLPIKDSRSLISSSARP*MMRFLRSCL 319
DQ + ++K + D L+SI YL + IKD + I+ S+ P ++ + +
Sbjct: 574 DQLDLPSISKKQLKIATFGSDNLQSIKSKGYLVNFLIKDKKIPIALSSVPSIVNSITTAK 633
Query: 320 YRNKHVPDSAHVSRHLLPLATT 385
+ V D H +LP TT
Sbjct: 634 INEETVQDLIHNDNAILPRTTT 655
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,379,763
Number of Sequences: 27780
Number of extensions: 360800
Number of successful extensions: 868
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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