Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0849
(808 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 159 3e-39
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 158 3e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 157 6e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 157 6e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 157 6e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 157 6e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At1g18610.1 68414.m02320 kelch repeat-containing protein contain... 32 0.39
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.6
At3g01450.1 68416.m00069 expressed protein 29 3.6
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 6.3
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 159 bits (385), Expect = 3e-39
Identities = 70/86 (81%), Positives = 81/86 (94%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA
Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI 507
TAIRGAIILAKLSV+P+RRGYWGNKI
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNKI 159
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +3
Query: 510 KXHTVPCXVTGKCGSVTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGT 680
K HTVPC VTGKCGSVT R++PAP G+ IV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 217
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/35 (68%), Positives = 32/35 (91%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++++WVPVTKLGRLV+EGKI K+E IYL SLP+K+
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 158 bits (384), Expect = 3e-39
Identities = 71/86 (82%), Positives = 80/86 (93%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI 507
TAIRGAIILAKLSV+PVRRGYWGNKI
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKI 168
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +3
Query: 510 KXHTVPCXVTGKCGSVTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGT 680
K HTVPC VTGKCGSVT R++PAP G+ IV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 226
Score = 51.6 bits (118), Expect = 6e-07
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++++WVPVTKLGRLV G I ++E IYL SLP+K+
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 157 bits (382), Expect = 6e-39
Identities = 71/86 (82%), Positives = 80/86 (93%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI 507
TAIRGAIILAKLSV+PVRRGYWGNKI
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKI 167
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +3
Query: 510 KXHTVPCXVTGKCGSVTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGT 680
K HTVPC VTGKCGSVT R++PAP G+ IV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 157 bits (382), Expect = 6e-39
Identities = 71/86 (82%), Positives = 80/86 (93%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI 507
TAIRGAIILAKLSV+PVRRGYWGNKI
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKI 167
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +3
Query: 510 KXHTVPCXVTGKCGSVTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGT 680
K HTVPC VTGKCGSVT R++PAP G+ IV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 157 bits (382), Expect = 6e-39
Identities = 71/86 (82%), Positives = 80/86 (93%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI 507
TAIRGAIILAKLSV+PVRRGYWGNKI
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKI 167
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +3
Query: 510 KXHTVPCXVTGKCGSVTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGT 680
K HTVPC VTGKCGSVT R++PAP G+ IV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 157 bits (382), Expect = 6e-39
Identities = 71/86 (82%), Positives = 80/86 (93%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNKI 507
TAIRGAIILAKLSV+PVRRGYWGNKI
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKI 167
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +3
Query: 510 KXHTVPCXVTGKCGSVTXRLIPAPSGTXIVSAPVPKKLLQMAGVQDCYTSARGSTGT 680
K HTVPC VTGKCGSVT R++PAP G+ IV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 295 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 474
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 475 PV 480
V
Sbjct: 209 QV 210
>At1g18610.1 68414.m02320 kelch repeat-containing protein contains
Pfam profile PF01344: Kelch motif
Length = 572
Score = 32.3 bits (70), Expect = 0.39
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -1
Query: 757 ILPQFRSEXGICLGNGSVCGFSKISQVPVEPRADV*QSCTPAI*RSFLGTGADTIXVPLG 578
ILP +S + NG SKIS+ ++ +A+ +S + + + G DTI PLG
Sbjct: 442 ILPADQSFSRPAMSNGDQDNRSKISRTLIKDQANAVESKDSQL--NGMEAGIDTISNPLG 499
Query: 577 AGISRXVTEPH 545
I+ PH
Sbjct: 500 VNITTVAVAPH 510
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -3
Query: 512 LSILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 333
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 332 VCFCTGMILRTSSFR 288
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -3
Query: 512 LSILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 333
L +LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 332 VCF 324
CF
Sbjct: 222 TCF 224
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 361 AFVAIGDNNGHIGLGVKCSKE 423
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,534,480
Number of Sequences: 28952
Number of extensions: 344767
Number of successful extensions: 854
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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