BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0848 (817 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 27 4.2 SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 26 7.4 SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 25 9.7 >SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1|||Manual Length = 996 Score = 26.6 bits (56), Expect = 4.2 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = -1 Query: 142 NEVTRLRYQNDVRPYRSYADNCYISIFTRLLLLLNYFITLKLEQ 11 N VT L ++ VR R DN Y+ + T + +T+K+ + Sbjct: 899 NGVTTLNLEDFVREIRKIDDNSYVRVSTSTFDKVPVVLTIKMNK 942 >SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1396 Score = 25.8 bits (54), Expect = 7.4 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Frame = -2 Query: 732 FQQSFPSEVHGYAYNR---GSCGYCGYFSASDLL 640 F S HG YN SC YC Y +A +L+ Sbjct: 1313 FSSFLNSSGHGIVYNPEAYSSCQYCPYKNADELM 1346 >SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 444 Score = 25.4 bits (53), Expect = 9.7 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +2 Query: 248 GCCELLDSYNGRDKVVRLAC 307 G C LL SY+ + K +++AC Sbjct: 206 GSCALLTSYSAKSKSLQVAC 225 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,951,384 Number of Sequences: 5004 Number of extensions: 54732 Number of successful extensions: 115 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 115 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 398435810 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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