Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0848
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    27   4.2  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   7.4  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    25   9.7  

>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 996

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 142  NEVTRLRYQNDVRPYRSYADNCYISIFTRLLLLLNYFITLKLEQ 11
            N VT L  ++ VR  R   DN Y+ + T     +   +T+K+ +
Sbjct: 899  NGVTTLNLEDFVREIRKIDDNSYVRVSTSTFDKVPVVLTIKMNK 942


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = -2

Query: 732  FQQSFPSEVHGYAYNR---GSCGYCGYFSASDLL 640
            F     S  HG  YN     SC YC Y +A +L+
Sbjct: 1313 FSSFLNSSGHGIVYNPEAYSSCQYCPYKNADELM 1346


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 248 GCCELLDSYNGRDKVVRLAC 307
           G C LL SY+ + K +++AC
Sbjct: 206 GSCALLTSYSAKSKSLQVAC 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,384
Number of Sequences: 5004
Number of extensions: 54732
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)