Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0848
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0288 + 24164671-24165549,24166113-24166496                       31   1.1  
07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744...    30   1.9  
04_03_0579 + 17481012-17481219,17481776-17481849,17482207-174822...    30   1.9  

>04_04_0288 + 24164671-24165549,24166113-24166496
          Length = 420

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 352 PRLIVGKTSIQLECVTSKTDNLISAIVTVQKLATSSVI 239
           PR+  G TS+ LECVT +       I   +KL   S++
Sbjct: 154 PRVFAGLTSLHLECVTVQGPRFSDVITACEKLIDLSLV 191


>07_01_0890 -
           7437901-7439339,7439452-7439657,7439841-7440171,
           7440268-7440405,7440619-7440874,7440963-7441318,
           7441421-7441709
          Length = 1004

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +1

Query: 496 PSDVAENGGADAKLKLDIRLALQAVVAGKLCL-DITH--AVSCLPAGWLWGEKIGSTKVA 666
           P  V     A ++L LDI + +   VAG LCL D T   A+  L     W E +  TK  
Sbjct: 158 PPMVRRGFAAASRLSLDINVLMLIAVAGALCLGDYTEAGAIVFLFTTAEWLETLACTK-- 215

Query: 667 AIATTSSVIGI 699
           A A  SS++G+
Sbjct: 216 ASAGMSSLMGM 226


>04_03_0579 +
           17481012-17481219,17481776-17481849,17482207-17482211,
           17482523-17482607,17484144-17484231,17484307-17484398,
           17484903-17485055
          Length = 234

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 595 CPGTASLLPQPVRLVGCLV*VSHQLHRFQQRLKAIP 488
           C G A ++ + VR +  LV ++H LH   Q+L+AIP
Sbjct: 84  CKGLACVISEQVRYLA-LVRIAHILHVCHQKLRAIP 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,612,571
Number of Sequences: 37544
Number of extensions: 388427
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)