Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0848
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39252| Best HMM Match : PEX11 (HMM E-Value=6.4e-35)                 38   0.013
SB_344| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.5  

>SB_39252| Best HMM Match : PEX11 (HMM E-Value=6.4e-35)
          Length = 239

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 361 SSRLSNARMMLRLFDDIPMIRHTYNYGLG 447
           + RL+  R MLRLFDD+ M  H   YGLG
Sbjct: 52  AGRLAECRTMLRLFDDLSMFFHVKKYGLG 80



 Score = 35.1 bits (77), Expect = 0.069
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +2

Query: 257 ELLDSYNGRDKVVRLACYTFKLYGCL 334
           ++++SY GRDKV+RL CY+  L G L
Sbjct: 9   KIMESYRGRDKVIRLLCYSGMLSGGL 34


>SB_344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -1

Query: 418 SSGYHQTVVASSWHLRVVSCGLPRLIVGKTSIQLECVTSKTDNLISAIVTVQKLATSSVI 239
           SSG+ + +      +RV S     LIVG  + Q+   +S +D LI    T Q  A SS  
Sbjct: 203 SSGFDELIGGHDTQVRVCSSSFDELIVGHDT-QVRACSSSSDELIGGHDT-QVGACSSSF 260

Query: 238 DDI 230
           D++
Sbjct: 261 DEL 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,636,224
Number of Sequences: 59808
Number of extensions: 444393
Number of successful extensions: 989
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)