Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0848
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    31   0.017
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   7.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.8  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 30.7 bits (66), Expect = 0.017
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 607 VSCLPAGWLWGEKIGSTKVAAIATTSS 687
           V C+PAGW+WG++    K+ A+    S
Sbjct: 158 VYCVPAGWIWGDQGFLKKLGAVDIAGS 184


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 683 EVVAIAATLVLPIFSP 636
           +VV++  T V+P+FSP
Sbjct: 150 KVVSVFYTAVIPMFSP 165


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 359 RSAKAYCR*DIHTT*MCNKQDGQPYLCHCNCP 264
           RS +  CR + H   +C+  D     C   CP
Sbjct: 731 RSEQFLCRYEAHCFALCHCCDFDACDCEMTCP 762


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 549  PTSLTGCGSREAVPG 593
            PT++T C + E VPG
Sbjct: 1201 PTTVTYCQTEEDVPG 1215


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 549  PTSLTGCGSREAVPG 593
            PT++T C + E VPG
Sbjct: 1197 PTTVTYCQTEEDVPG 1211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,265
Number of Sequences: 438
Number of extensions: 3997
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)