Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0846
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     29   3.4  
SB_41846| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32)                 28   7.9  

>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 420 PYNTXRKIPQHPLITPDSHNTITRFLFXXXXXXNFFC 530
           PYN  R+ P H   TP + + + +F+        F+C
Sbjct: 284 PYNESRQQPLHSYTTPSTFDKLKQFIELDRKVLRFYC 320


>SB_41846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 72  DLPVPRVESTSTDVPRKIWDLFSWNYICVLAINASANLIVNVLRNLGLCLHIYL 233
           D+P PR+   S D+PR I D  SW+   V  +     L+  V   L  C   Y+
Sbjct: 106 DIPFPRLNRKSKDIPRIIHD--SWS---VRRMKKELALMFTVFVGLIACARTYI 154


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 340  SVIISSSKFKRLVQWVVKQMFYVTSFLIDTNYILRLKYMCRHKPK 206
            SVI+ SS  +++  W  + +    S   D+NY+L+++Y C H  K
Sbjct: 2320 SVILKSSDARKIT-WNHQNIH--ASLSNDSNYLLQMRYTCGHHGK 2361


>SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32)
          Length = 871

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +3

Query: 165 INASANLIVNVLRNLGLCLHIYLSRSI*FVSIRNEVT*NICLTTHCTSRLNLLLDII 335
           IN    L +N+L    LC+ I   RS  F++I +  T  I   T  T     LLD+I
Sbjct: 197 INYKLRLDLNILDLENLCIDINKPRSTPFLTIIHGSTQLIKEATRITENTATLLDVI 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,624,141
Number of Sequences: 59808
Number of extensions: 378358
Number of successful extensions: 719
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)