Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0846
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51320.1 68416.m05617 pentatricopeptide (PPR) repeat-containi...    31   0.92 
At1g68570.1 68414.m07834 proton-dependent oligopeptide transport...    27   8.6  

>At3g51320.1 68416.m05617 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 486

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +3

Query: 156 VLAINA---SANLIVNVLRNLGLCLHIYLSRSI*-FVSIRNEVT*NICLTTHC 302
           VL +NA   SA L   ++   G C  + L+R I   +SIRN+VT N+ +  HC
Sbjct: 231 VLLLNACGRSARLKEALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHC 283


>At1g68570.1 68414.m07834 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 596

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 120 KIWDLFSWNYICV-LAINASANLIVNVLRNLGLCLHIYLSRSI*FVSI 260
           K W+ F+W Y C+  A+  +  ++V +  N+G  L + +     F+S+
Sbjct: 179 KTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSV 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,374,827
Number of Sequences: 28952
Number of extensions: 253420
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)