BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0846 (673 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g51320.1 68416.m05617 pentatricopeptide (PPR) repeat-containi... 31 0.92 At1g68570.1 68414.m07834 proton-dependent oligopeptide transport... 27 8.6 >At3g51320.1 68416.m05617 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 486 Score = 30.7 bits (66), Expect = 0.92 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Frame = +3 Query: 156 VLAINA---SANLIVNVLRNLGLCLHIYLSRSI*-FVSIRNEVT*NICLTTHC 302 VL +NA SA L ++ G C + L+R I +SIRN+VT N+ + HC Sbjct: 231 VLLLNACGRSARLKEALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHC 283 >At1g68570.1 68414.m07834 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family Length = 596 Score = 27.5 bits (58), Expect = 8.6 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 120 KIWDLFSWNYICV-LAINASANLIVNVLRNLGLCLHIYLSRSI*FVSI 260 K W+ F+W Y C+ A+ + ++V + N+G L + + F+S+ Sbjct: 179 KTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSV 226 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,374,827 Number of Sequences: 28952 Number of extensions: 253420 Number of successful extensions: 546 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 537 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 546 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1422784080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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