Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0844
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    42   4e-05
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   1.2  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   3.6  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.8  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   6.3  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    25   6.3  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    24   8.4  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 41.9 bits (94), Expect = 4e-05
 Identities = 19/51 (37%), Positives = 32/51 (62%)
 Frame = +3

Query: 264 KLPKLRXDMXAVXLRQYXGTQEGGRXXMAVNGWIFDVTRGNRFYGPGGPYA 416
           K P+ R D     L++Y G++      +A+ G +++VT G++FYGP GPY+
Sbjct: 36  KQPEWR-DYTPAELKEYNGSKNS-LVFLAIKGTVYNVTMGSKFYGPQGPYS 84


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 266 FFQGATFEQCVLYL**NLYSXTNV 195
           FF+ AT +QC+L    +L+S TN+
Sbjct: 16  FFRNATLDQCLLLFYLSLFSLTNL 39


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 397 P*NRFPLVTSNIHPFTAIXXLPPS 326
           P +RFP   +N  PF A   LPP+
Sbjct: 66  PFDRFPGTNANFFPFGAPFMLPPA 89


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 124 WLAHFQPLVVNPFYSR*KNVCAGTLSFCFYSILNL 20
           W+  + P+++  FY   + V AG  SF   S+L +
Sbjct: 239 WMNIWCPIILYEFYGNDRQVQAGMSSFLIPSLLGV 273


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 98  HQRLKMCKPNTVAFLRP*KHCFVNRLXI 181
           H  LK   PN  +F +P    F+NR+ I
Sbjct: 30  HSSLKDGSPNKKSFAQPISSSFLNRISI 57


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 414 HMAHRDRRTDSL*SHRISTHSQPSTXCXPPVSXRTAVVLLRSY 286
           H+ HRD +  ++       HS+P + C P  S    V +  +Y
Sbjct: 486 HLVHRDLKPRNIFLSS-GVHSEPCSVCLPNFSDEDNVEVSNAY 527


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 34  NKNKNLMCRHRRFST*NKMDSPPEVENVQAKHS 132
           +KN + M +H      NK +SP + ENV A  S
Sbjct: 335 SKNIHSMFQHFNSMKKNKNNSPTQSENVSASAS 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,878
Number of Sequences: 5004
Number of extensions: 28257
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)