Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0844
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...    43   1e-04
U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...    43   1e-04
U80445-7|AAB37798.1|  368|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U80437-6|AAB37621.1|  368|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    28   3.1  

>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 22/53 (41%), Positives = 27/53 (50%)
 Frame = +3

Query: 255 PLKKLPKLRXDMXAVXLRQYXGTQEGGRXXMAVNGWIFDVTRGNRFYGPGGPY 413
           P +  P    DM    LR+Y G +        +NG I+DVTRG  FYGPG  Y
Sbjct: 39  PKELAPLPMSDMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAY 90


>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 22/53 (41%), Positives = 27/53 (50%)
 Frame = +3

Query: 255 PLKKLPKLRXDMXAVXLRQYXGTQEGGRXXMAVNGWIFDVTRGNRFYGPGGPY 413
           P +  P    DM    LR+Y G +        +NG I+DVTRG  FYGPG  Y
Sbjct: 54  PKELAPLPMSDMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAY 105


>U80445-7|AAB37798.1|  368|Caenorhabditis elegans Hypothetical
           protein C50F2.5 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 150 KNTVLSTVYXFCFCEYICXTV 212
           +N  +ST Y FCFC  +C  +
Sbjct: 313 RNGSISTYYQFCFCMAVCLNI 333


>U80437-6|AAB37621.1|  368|Caenorhabditis elegans Hypothetical
           protein C43E11.5 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 150 KNTVLSTVYXFCFCEYICXTV 212
           +N  +ST Y FCFC  +C  +
Sbjct: 313 RNGSISTYYQFCFCMAVCLNI 333


>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 303 LRQYXGTQEGGRXXMAVNGWIFDVTRGNRFYGPGGPY 413
           L  + GT++     +A+ G +++V     +YGPG  Y
Sbjct: 106 LHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSY 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,473,145
Number of Sequences: 27780
Number of extensions: 169886
Number of successful extensions: 324
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)