Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0844
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   2.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    20   9.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    20   9.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   9.9  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 149 KVSKKPLCLACTFSTSGGE 93
           K +KKPL   C F  + GE
Sbjct: 30  KKNKKPLPTECVFCRNNGE 48


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 47  T*CAGTDVFLPRIKWIHHQRLKMCK 121
           T CA  + FLP++K I       CK
Sbjct: 572 TYCAFWNEFLPKLKGIPDPXPNTCK 596


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -2

Query: 129 VFGLHIFNLW 100
           +FG+H+  LW
Sbjct: 103 IFGIHLCKLW 112


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -2

Query: 129 VFGLHIFNLW 100
           +FG+H+  LW
Sbjct: 103 IFGIHLCKLW 112


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -2

Query: 129 VFGLHIFNLW 100
           +FG+H+  LW
Sbjct: 103 IFGIHLCKLW 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,203
Number of Sequences: 438
Number of extensions: 2039
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)