Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0844
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein...    46   1e-05
At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein...    45   2e-05
At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein...    44   3e-05
At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein...    35   0.026

>At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein
           similar to SP|P70580 Membrane associated progesterone
           receptor component 1 {Rattus norvegicus}; contains Pfam
           profile PF00173: Heme/Steroid binding domain
          Length = 100

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = +3

Query: 285 DMXAVXLRQYXGTQEGGRXXMAVNGWIFDVTRGNRFYGPGGPYAV 419
           +  A  L QY GT E     +A+ G +FDVT G  FYG GG Y++
Sbjct: 2   EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSM 46


>At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein
           similar to SP|P70580 Membrane associated progesterone
           receptor component 1 {Rattus norvegicus}; contains Pfam
           profile PF00173: Heme/Steroid binding domain
          Length = 220

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +3

Query: 303 LRQYXGTQEGGRXXMAVNGWIFDVTRGNRFYGPGGPYAV 419
           L+QY G+       MA+   I+DVT+   FYGPGGPYA+
Sbjct: 80  LKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYAL 118


>At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein
           similar to SP|O00264 Membrane associated progesterone
           receptor component (mPR) {Homo sapiens}; contains Pfam
           profile PF00173: Heme/Steroid binding domain
          Length = 233

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 303 LRQYXGTQEGGRXXMAVNGWIFDVTRGNRFYGPGGPYAV 419
           L+ Y G+       MA+ G I+DV++   FYGPGGPYA+
Sbjct: 76  LKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYAL 114


>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
           similar to SP|O15173 Membrane associated progesterone
           receptor component 2 (Steroid receptor protein DG6)
           {Homo sapiens}; contains Pfam profile PF00173:
           Heme/Steroid binding domain
          Length = 245

 Score = 34.7 bits (76), Expect = 0.026
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 294 AVXLRQYXGTQEGGRXXMAVNGWIFDVTRGNRFYGPGGPY 413
           A  L  Y GT E     + + G +FDVT+G   YG GG Y
Sbjct: 44  AEELALYNGTDETLPILLGILGSVFDVTKGKFHYGSGGGY 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,687,612
Number of Sequences: 28952
Number of extensions: 149707
Number of successful extensions: 311
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)