Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0843
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 63 1e-11
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 31 0.075
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 31 0.075
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 29 0.23
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 26 1.6
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 25 4.9
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 25 4.9
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 24 6.5
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 24 8.6
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 63.3 bits (147), Expect = 1e-11
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +1
Query: 250 VEDDRLAQHVPTLXPTSEXLXIGSMRFTTFDLGGHQQARR 369
+++DRLA PTL PTSE L IG++RFTTFDLGGHQQARR
Sbjct: 40 LKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARR 79
Score = 62.5 bits (145), Expect = 2e-11
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +2
Query: 134 MFILDWFXGVLGFLGLWKKSGKLLFLGLDNAGKTTLXHMLK 256
MFI++WF L LGL K K+LFLGLDNAGKTTL HMLK
Sbjct: 1 MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLK 41
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 30.7 bits (66), Expect = 0.075
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +2
Query: 185 KKSGKLLFLGLDNAGKTTLXHMLKMIDLL 271
K+ ++L +GLD AGKTT+ + LK+ +++
Sbjct: 15 KREMRILMVGLDAAGKTTILYKLKLGEIV 43
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 30.7 bits (66), Expect = 0.075
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 188 KSGKLLFLGLDNAGKTTLXHMLKM 259
K ++L LGLD AGKTT+ + LK+
Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKL 43
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 29.1 bits (62), Expect = 0.23
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 179 LWKKSGKLLFLGLDNAGKTTLXHML 253
L ++ ++L LGLDNAGKTT+ L
Sbjct: 12 LKEREVRVLLLGLDNAGKTTILKCL 36
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 280 PTLXPTSEXLXIGSMRFTTFDLGGHQQAR 366
PT L + +RFT +D+GG + R
Sbjct: 46 PTFGFQIRTLEVEGLRFTIWDIGGQKTLR 74
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 54 LQISAKTRDTLPLGLVXNIVQFNYIQKCLSSTGSXECWDFLV 179
LQI +D LG+ NIV + +I + TG+ +++V
Sbjct: 113 LQIKLILQDADRLGIQFNIVDYTHILRVAMYTGNKHILEYIV 154
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 24.6 bits (51), Expect = 4.9
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Frame = +3
Query: 21 LKKLSILQR---NILQISAKTRDTLPLGLVXNIVQFNYIQ----KCLSSTGSXEC 164
L++++IL+R + + I+AK+ DTL + ++ F Y++ + + TGS C
Sbjct: 428 LREVNILKRLRESCVAITAKSYDTLDERKIRSLTTFEYLEIKNFQKIYFTGSENC 482
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 191 SGKLLFLGLDNAGKTTLXHMLKMIDLL 271
S K+L G NAGK+TL + L D+L
Sbjct: 154 SSKILITGDLNAGKSTLCNALVHKDIL 180
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 200 LLFLGLDNAGKTTLXHML 253
++ GL AGKTTL H++
Sbjct: 419 MMLTGLAGAGKTTLAHVI 436
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 8.6
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 197 KLLFLGLDNAGKTTLXHMLKMI 262
K+L LG ++GKTT+ ++++
Sbjct: 76 KVLLLGAGDSGKTTIMKQMRLL 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,882
Number of Sequences: 5004
Number of extensions: 20266
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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