Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0843
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_214| Best HMM Match : Arf (HMM E-Value=0)                           64   3e-11
SB_56255| Best HMM Match : Arf (HMM E-Value=0)                         34   0.041
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.17 
SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.22 
SB_11310| Best HMM Match : Arf (HMM E-Value=0)                         31   0.29 
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.29 
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)               31   0.39 
SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36)                     30   0.67 
SB_53421| Best HMM Match : Arf (HMM E-Value=0)                         30   0.67 
SB_37042| Best HMM Match : Arf (HMM E-Value=0)                         29   1.6  
SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)                29   1.6  
SB_17883| Best HMM Match : ShTK (HMM E-Value=0.16)                     27   3.6  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 27   4.8  
SB_41921| Best HMM Match : 7tm_1 (HMM E-Value=2e-39)                   27   4.8  
SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  

>SB_214| Best HMM Match : Arf (HMM E-Value=0)
          Length = 148

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 28/35 (80%), Positives = 31/35 (88%)
 Frame = +1

Query: 265 LAQHVPTLXPTSEXLXIGSMRFTTFDLGGHQQARR 369
           +AQHVPTL PTSE L +G MRFTTFDLGGH+QARR
Sbjct: 1   MAQHVPTLHPTSEELSMGGMRFTTFDLGGHRQARR 35


>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
          Length = 181

 Score = 33.9 bits (74), Expect = 0.041
 Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = +2

Query: 170 FLGLW-KKSGKLLFLGLDNAGKTTLXHMLKMIDLL 271
           F GL+ KK  ++L +GLD AGKTT+ + LK+ +++
Sbjct: 9   FAGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV 43


>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +2

Query: 185 KKSGKLLFLGLDNAGKTTLXHMLKMIDLL 271
           KK  ++L +GLD AGKTT+ + LK+ +++
Sbjct: 15  KKQMRILMVGLDAAGKTTILYKLKLGEIV 43


>SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
 Frame = +2

Query: 176 GLWKKSGK-----LLFLGLDNAGKTTLXHMLK 256
           GLWK   +     +L LGLDNAGKTTL   +K
Sbjct: 11  GLWKYLFQKDEYFILILGLDNAGKTTLLEQIK 42


>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
          Length = 255

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 179 LWKKSGKLLFLGLDNAGKTTLXHMLKMIDLLN 274
           L K   +LL +GLD AGKTT+ + LK+ + +N
Sbjct: 86  LGKDELRLLMVGLDAAGKTTILYHLKLDEPVN 117


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +2

Query: 197 KLLFLGLDNAGKTTLXHMLKMIDLLNM 277
           ++L LGLDN+GKTT+   L   D+L++
Sbjct: 19  RILLLGLDNSGKTTILKSLASEDVLHI 45


>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
          Length = 936

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 182 WKKSGKLLFLGLDNAGKTTLXHMLKMIDLLNMY 280
           W   G +  LG  N+GKTTL +    +DLLN++
Sbjct: 281 WDHDGDIYMLGCSNSGKTTLFN--TFMDLLNVH 311


>SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36)
          Length = 260

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 140 ILDWFXGVLGFLGLWKKSGKLLFLGLDNAGKTTLXHML 253
           ILDWF  +      WK+  +L  +GL  +GKTT  +++
Sbjct: 8   ILDWFKSLF-----WKEEMELTLVGLQYSGKTTFVNVI 40


>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
          Length = 625

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 11/22 (50%), Positives = 19/22 (86%)
 Frame = +2

Query: 209 LGLDNAGKTTLXHMLKMIDLLN 274
           +GLDNAGKTT+ + LK+ ++++
Sbjct: 2   IGLDNAGKTTILYRLKLEEVVS 23


>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
          Length = 188

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 197 KLLFLGLDNAGKTTLXHMLKM 259
           +++ LGLD AGKTT+ + LK+
Sbjct: 21  RIVMLGLDAAGKTTILYKLKL 41


>SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)
          Length = 882

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 197 KLLFLGLDNAGKTTLXHMLK 256
           KL+F+G+ N GKTTL + L+
Sbjct: 2   KLMFVGVSNIGKTTLLNQLR 21


>SB_17883| Best HMM Match : ShTK (HMM E-Value=0.16)
          Length = 209

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 126 IQKCLSSTGSXECWDFLVYGKSRASSCFWXLTMQGRQHSXI 248
           +++CLSST    CWDF          C   L ++ R+H  +
Sbjct: 94  LKRCLSSTYGC-CWDFTPALGPNGEGCAVRLLLRRRRHQLL 133


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 194  GKLLFLGLDNAGKTTLXHMLKMIDLLNMYLLXI 292
            G LL +G+  AGKTTL   +  ++ L+++ + I
Sbjct: 2874 GHLLLIGVSGAGKTTLSRFVAWMNGLSVFQVKI 2906


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 126  IQKCLSSTGSXECWDFLVYGKSRASSCFWXLTMQGRQHSXI 248
            +++CLSST    CWDF          C   L ++ R+H  +
Sbjct: 1162 LKRCLSSTYGC-CWDFRPALGPNGEGCAVRLLLRRRRHQLL 1201


>SB_41921| Best HMM Match : 7tm_1 (HMM E-Value=2e-39)
          Length = 335

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 262 YHLQHMXECCLPCIVKXQKQELARLFP*TKKSQHSXEPV 146
           Y +  + E C PC VK   Q + R+F   K  Q+S   V
Sbjct: 245 YIIALVGEFCQPCFVKLGWQNITRVFNFAKWLQYSNSAV 283


>SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 81  TLPLGLVXNIVQFNYI-QKCLSSTGSXECWDFLVYGKSRASSCF 209
           TLPL L+  +    Y  Q C     +  CW FL   +S   SCF
Sbjct: 276 TLPLMLIAWVAMKRYRKQNCSYRLFAAVCWCFLRCAESWPPSCF 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,442,025
Number of Sequences: 59808
Number of extensions: 150540
Number of successful extensions: 397
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)