Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0843
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   2.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   2.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   4.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -2

Query: 63  LFVICYVVKWIISLANDYC 7
           +F+IC+V  + +++   YC
Sbjct: 280 VFLICWVPFFCVNIVTSYC 298


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 5/21 (23%), Positives = 16/21 (76%)
 Frame = -2

Query: 63  LFVICYVVKWIISLANDYCDE 1
           +F+IC++  ++++L + +C +
Sbjct: 343 VFIICWLPFFVVNLWSGFCSQ 363


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 170 FLGLWKKSGKLLFLGLDNAGKTTL 241
           F+  +K  GK+L L +  AGK+ +
Sbjct: 127 FVADYKIEGKVLLLPVRGAGKSNI 150


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 212 PETRACPTFSIDQEI 168
           P  R C  F  DQE+
Sbjct: 340 PRARGCIIFGSDQEV 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,034
Number of Sequences: 438
Number of extensions: 1451
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)