Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0842
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.48 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.8  

>SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 455 ILNLTADIIYLILLRTARHGSTRIKLYAHYK 547
           + +L   + Y   LR  R+G T ++LY HYK
Sbjct: 59  LFSLYTIVQYFKSLRCLRNGRTEVRLYTHYK 89


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +1

Query: 355 FIYLYIYTHAYIRSFLIFIVYPISHALARV 444
           F+YLY+    +I  FL+++++  + ++A +
Sbjct: 196 FLYLYVLFTYFISIFLLYVLFSSTKSIADI 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,703
Number of Sequences: 5004
Number of extensions: 43054
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)