Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0842
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical...    29   4.1  
Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +1

Query: 427 HALARVCRDDIESDC*HYISNTAAYCTPRQHTHKTIRALQNTITDTEITVLF 582
           H L ++CR+D+ SD      +   +    + + KT+ A+  T+ DT+ +++F
Sbjct: 117 HILPKLCREDL-SDIQLEYRSFQVFPGEEESSWKTVSAVAKTLKDTKTSLIF 167


>AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.1 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -2

Query: 349 YLHXTHNTTHVNDPSXGSLRKPCY-DFYFL*MISLVNFPTTPTA--VKPPRVGPKTSLNH 179
           YL  T NT    + + G     C  D Y +  +  +N PTT T   VKPP   PK +   
Sbjct: 161 YLTPTSNTAWWKNQTIGEPGSACDPDRYNIDGLCSLNPPTTTTTTTVKPPPATPKPAKEK 220

Query: 178 SIGSSDG 158
               +DG
Sbjct: 221 DPKKADG 227


>Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical
           protein F54B11.7 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 238 PTTPTAVKPPRVGPKTSLNHS-IGSSD 161
           PTTP A KP    PKTSL+ S  GS+D
Sbjct: 69  PTTPPA-KPKEPAPKTSLSKSDSGSAD 94


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 106 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 5
           L G+P ++G++  P+   EG++    G    ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333


>AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical
           protein Y57A10B.1 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 282 QGFRREPXEGSLTCVVLCVICKYFIYLFIYIYACIHS 392
           + +RRE  E  L+ V L     +F+  F+ +YA + S
Sbjct: 370 ESYRREEAENVLSTVTLIAAMVFFLSFFLAMYAHVKS 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,229,024
Number of Sequences: 27780
Number of extensions: 251846
Number of successful extensions: 826
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)