BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0841 (444 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 3.0 SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 25 5.2 SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 24 9.1 SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ... 24 9.1 >SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharomyces pombe|chr 3|||Manual Length = 461 Score = 25.8 bits (54), Expect = 3.0 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = -3 Query: 121 KQGGFDGSVSATATQAVGTSRAEFLQPG 38 ++G FDG + + +G A+ LQPG Sbjct: 101 EKGPFDGLIGFSQGAGIGAMLAQMLQPG 128 >SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces pombe|chr 2|||Manual Length = 351 Score = 25.0 bits (52), Expect = 5.2 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -3 Query: 64 SRAEFLQPGGSTSSRAA 14 ++AEF PGGS RAA Sbjct: 42 AKAEFQNPGGSVKDRAA 58 >SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 867 Score = 24.2 bits (50), Expect = 9.1 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = -3 Query: 175 CRRYPLR*HSRRDPAMTGKQGGFDGSVSATATQAVGTSRAEFLQPGGST-SSRAAAP 8 CR++ L + R P G GF+ + +A G++++ GS S A+P Sbjct: 101 CRKHHLDCNFTRTPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASP 157 >SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 203 Score = 24.2 bits (50), Expect = 9.1 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -2 Query: 101 FGFGDCDTGCWYISCRIPA 45 + F D GCW ++ RIPA Sbjct: 73 WSFTPFDEGCWGMAFRIPA 91 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,437,712 Number of Sequences: 5004 Number of extensions: 23655 Number of successful extensions: 78 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 78 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 162176800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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