Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0841
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    26   3.0  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    25   5.2  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.1  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    24   9.1  

>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 121 KQGGFDGSVSATATQAVGTSRAEFLQPG 38
           ++G FDG +  +    +G   A+ LQPG
Sbjct: 101 EKGPFDGLIGFSQGAGIGAMLAQMLQPG 128


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 64 SRAEFLQPGGSTSSRAA 14
          ++AEF  PGGS   RAA
Sbjct: 42 AKAEFQNPGGSVKDRAA 58


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 175 CRRYPLR*HSRRDPAMTGKQGGFDGSVSATATQAVGTSRAEFLQPGGST-SSRAAAP 8
           CR++ L  +  R P   G   GF+ +      +A G++++      GS  S   A+P
Sbjct: 101 CRKHHLDCNFTRTPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASP 157


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 101 FGFGDCDTGCWYISCRIPA 45
           + F   D GCW ++ RIPA
Sbjct: 73  WSFTPFDEGCWGMAFRIPA 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,712
Number of Sequences: 5004
Number of extensions: 23655
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)