Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0841
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-1|CAA99889.1|  546|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z81073-4|CAD56580.1|  288|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z81073-3|CAC42296.1|  288|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    27   6.1  
AF025466-4|AAY55877.1|  173|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z75546-1|CAA99889.1|  546|Caenorhabditis elegans Hypothetical
           protein R05D11.1 protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 124 GKQGGFDGSVSATATQAVGTSRAEFLQ 44
           G  G FDGS  ++ T ++G+S A  LQ
Sbjct: 209 GNFGSFDGSPCSSTTMSLGSSFASLLQ 235


>Z81073-4|CAD56580.1|  288|Caenorhabditis elegans Hypothetical
           protein F30F8.9b protein.
          Length = 288

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 51  NSARDVPTACVAVAETEPSNPPCLPVIAGS 140
           NS  + PT  VAV +T    PP  P   GS
Sbjct: 13  NSVLNSPTFLVAVRQTSAGPPPATPAKEGS 42


>Z81073-3|CAC42296.1|  288|Caenorhabditis elegans Hypothetical
           protein F30F8.9a protein.
          Length = 288

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 51  NSARDVPTACVAVAETEPSNPPCLPVIAGS 140
           NS  + PT  VAV +T    PP  P   GS
Sbjct: 13  NSVLNSPTFLVAVRQTSAGPPPATPAKEGS 42


>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 148 SRRDPAMTGKQGGFDGSVSATATQAVGTSRAEFLQPG---GSTSSRAAAP 8
           S    A T   GG  GS +A  +  +  S A    PG   GSTS+  AAP
Sbjct: 145 SSTSTATTAPTGGLFGSSTAAPSSGLFGSTAAPAAPGGLFGSTSTSTAAP 194


>AF025466-4|AAY55877.1|  173|Caenorhabditis elegans Hypothetical
           protein T23F4.5 protein.
          Length = 173

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 184 PNRCRRYPLR*HSRRDPAMTGKQGGFDGSVSATA 83
           P R   Y  R H RRDP      G  DG++  +A
Sbjct: 88  PQRSEDYQERGHYRRDPFFNFSGGNSDGALKDSA 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,435,108
Number of Sequences: 27780
Number of extensions: 151061
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)