BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0841 (444 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z75546-1|CAA99889.1| 546|Caenorhabditis elegans Hypothetical pr... 27 4.6 Z81073-4|CAD56580.1| 288|Caenorhabditis elegans Hypothetical pr... 27 6.1 Z81073-3|CAC42296.1| 288|Caenorhabditis elegans Hypothetical pr... 27 6.1 U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 27 6.1 AF025466-4|AAY55877.1| 173|Caenorhabditis elegans Hypothetical ... 27 8.1 >Z75546-1|CAA99889.1| 546|Caenorhabditis elegans Hypothetical protein R05D11.1 protein. Length = 546 Score = 27.5 bits (58), Expect = 4.6 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 124 GKQGGFDGSVSATATQAVGTSRAEFLQ 44 G G FDGS ++ T ++G+S A LQ Sbjct: 209 GNFGSFDGSPCSSTTMSLGSSFASLLQ 235 >Z81073-4|CAD56580.1| 288|Caenorhabditis elegans Hypothetical protein F30F8.9b protein. Length = 288 Score = 27.1 bits (57), Expect = 6.1 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +3 Query: 51 NSARDVPTACVAVAETEPSNPPCLPVIAGS 140 NS + PT VAV +T PP P GS Sbjct: 13 NSVLNSPTFLVAVRQTSAGPPPATPAKEGS 42 >Z81073-3|CAC42296.1| 288|Caenorhabditis elegans Hypothetical protein F30F8.9a protein. Length = 288 Score = 27.1 bits (57), Expect = 6.1 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +3 Query: 51 NSARDVPTACVAVAETEPSNPPCLPVIAGS 140 NS + PT VAV +T PP P GS Sbjct: 13 NSVLNSPTFLVAVRQTSAGPPPATPAKEGS 42 >U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore complex protein protein11 protein. Length = 805 Score = 27.1 bits (57), Expect = 6.1 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = -3 Query: 148 SRRDPAMTGKQGGFDGSVSATATQAVGTSRAEFLQPG---GSTSSRAAAP 8 S A T GG GS +A + + S A PG GSTS+ AAP Sbjct: 145 SSTSTATTAPTGGLFGSSTAAPSSGLFGSTAAPAAPGGLFGSTSTSTAAP 194 >AF025466-4|AAY55877.1| 173|Caenorhabditis elegans Hypothetical protein T23F4.5 protein. Length = 173 Score = 26.6 bits (56), Expect = 8.1 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -3 Query: 184 PNRCRRYPLR*HSRRDPAMTGKQGGFDGSVSATA 83 P R Y R H RRDP G DG++ +A Sbjct: 88 PQRSEDYQERGHYRRDPFFNFSGGNSDGALKDSA 121 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,435,108 Number of Sequences: 27780 Number of extensions: 151061 Number of successful extensions: 505 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 486 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 505 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 767282256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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