Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0841
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   0.86 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 0.86
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 64  SRAEFLQPGGSTSSRAA 14
           ++ EFL PGGS   R A
Sbjct: 66  AKCEFLNPGGSVKDRIA 82



 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 34  IPRAAGIRHEMYQQPVSQSPKPNHQTHLAYQSLLD 138
           IP++ GI+ E+Y +    +P  + +  +AY+ + D
Sbjct: 54  IPKSYGIKCEIYAKCEFLNPGGSVKDRIAYRMIQD 88


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = -3

Query: 193 LLRPNRCRRYPLR*HSRRDPAMTGKQGGFDGSVSATATQA 74
           LL P+RC +  +    +    +    GG+D  +  +   A
Sbjct: 15  LLHPSRCTQGKVNYREKEKEVLDNILGGYDARIRPSGENA 54


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = -3

Query: 193 LLRPNRCRRYPLR*HSRRDPAMTGKQGGFDGSVSATATQA 74
           LL P+RC +  +    +    +    GG+D  +  +   A
Sbjct: 15  LLHPSRCTQGKVNYREKEKEVLDNILGGYDARIRPSGENA 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,229
Number of Sequences: 438
Number of extensions: 1888
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)