BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0841 (444 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger) fa... 31 0.46 At1g27595.1 68414.m03365 expressed protein similar to Symplekin ... 29 1.4 At4g33730.1 68417.m04789 pathogenesis-related protein, putative ... 27 5.7 At4g09390.1 68417.m01548 hypothetical protein various predicted ... 27 5.7 At3g21210.1 68416.m02680 universal stress protein (USP) family p... 26 10.0 >At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger) family protein (ATL6) contains Pfam profile: PF00097: Zinc finger, C3HC4 type (RING finger) Length = 398 Score = 30.7 bits (66), Expect = 0.46 Identities = 14/22 (63%), Positives = 16/22 (72%) Frame = -1 Query: 342 WRSCSTHPDSGHGPACGARSRA 277 +R CS PD+G PA GARSRA Sbjct: 70 FRHCSGVPDAGVSPAGGARSRA 91 >At1g27595.1 68414.m03365 expressed protein similar to Symplekin (SP:Q92797) {Homo sapiens} Length = 1091 Score = 29.1 bits (62), Expect = 1.4 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = +3 Query: 9 GAAALELVDPPGCRNSARDVPTAC 80 G++ + ++DPP CR VP C Sbjct: 392 GSSGIRIIDPPECREDLLTVPNEC 415 >At4g33730.1 68417.m04789 pathogenesis-related protein, putative similar to SP|P33154 Pathogenesis-related protein 1 precursor (PR-1) {Arabidopsis thaliana}; contains Pfam profile PF00188: SCP-like extracellular protein Length = 172 Score = 27.1 bits (57), Expect = 5.7 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = -1 Query: 324 HPDSGHGPACGARSRAAGWRGTS-LGRGE 241 + +S HGPACG ++ WRG++ LG G+ Sbjct: 119 YSNSCHGPACGHYTQVV-WRGSARLGCGK 146 >At4g09390.1 68417.m01548 hypothetical protein various predicted proteins -Arabidopsis thaliana Length = 220 Score = 27.1 bits (57), Expect = 5.7 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +2 Query: 152 SAEWVTSAAVGAQKKRNASPVLLELNARGNSPRPRLVPRQPAARDRA 292 ++E VTS + K + PV E+ G++ LVP +PAARD A Sbjct: 61 TSEPVTSTDKPSGKVSTSEPVTSEIENDGDAVD--LVPTEPAARDVA 105 >At3g21210.1 68416.m02680 universal stress protein (USP) family protein / DC1 domain-containing protein contains Pfam profiles PF03107: DC1 domain, PF00582: universal stress protein family Length = 686 Score = 26.2 bits (55), Expect = 10.0 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 16 PL*N*WIPRAAGIRHEMYQQPVSQSP-KPNHQTHLAYQS 129 PL + + R++G HE +P+S+ P P H Y+S Sbjct: 294 PLQSSVLSRSSGYYHEACIEPISKHPYHPKHALRFRYES 332 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,174,824 Number of Sequences: 28952 Number of extensions: 146439 Number of successful extensions: 429 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 419 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 429 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 712739520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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