Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0841
         (444 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger) fa...    31   0.46 
At1g27595.1 68414.m03365 expressed protein similar to Symplekin ...    29   1.4  
At4g33730.1 68417.m04789 pathogenesis-related protein, putative ...    27   5.7  
At4g09390.1 68417.m01548 hypothetical protein various predicted ...    27   5.7  
At3g21210.1 68416.m02680 universal stress protein (USP) family p...    26   10.0 

>At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger)
           family protein (ATL6) contains Pfam profile: PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 398

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -1

Query: 342 WRSCSTHPDSGHGPACGARSRA 277
           +R CS  PD+G  PA GARSRA
Sbjct: 70  FRHCSGVPDAGVSPAGGARSRA 91


>At1g27595.1 68414.m03365 expressed protein similar to Symplekin
           (SP:Q92797) {Homo sapiens}
          Length = 1091

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 9   GAAALELVDPPGCRNSARDVPTAC 80
           G++ + ++DPP CR     VP  C
Sbjct: 392 GSSGIRIIDPPECREDLLTVPNEC 415


>At4g33730.1 68417.m04789 pathogenesis-related protein, putative
           similar to SP|P33154 Pathogenesis-related protein 1
           precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
           profile PF00188: SCP-like extracellular protein
          Length = 172

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 324 HPDSGHGPACGARSRAAGWRGTS-LGRGE 241
           + +S HGPACG  ++   WRG++ LG G+
Sbjct: 119 YSNSCHGPACGHYTQVV-WRGSARLGCGK 146


>At4g09390.1 68417.m01548 hypothetical protein various predicted
           proteins -Arabidopsis thaliana
          Length = 220

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +2

Query: 152 SAEWVTSAAVGAQKKRNASPVLLELNARGNSPRPRLVPRQPAARDRA 292
           ++E VTS    + K   + PV  E+   G++    LVP +PAARD A
Sbjct: 61  TSEPVTSTDKPSGKVSTSEPVTSEIENDGDAVD--LVPTEPAARDVA 105


>At3g21210.1 68416.m02680 universal stress protein (USP) family
           protein / DC1 domain-containing protein contains Pfam
           profiles PF03107: DC1 domain, PF00582: universal stress
           protein family
          Length = 686

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 16  PL*N*WIPRAAGIRHEMYQQPVSQSP-KPNHQTHLAYQS 129
           PL +  + R++G  HE   +P+S+ P  P H     Y+S
Sbjct: 294 PLQSSVLSRSSGYYHEACIEPISKHPYHPKHALRFRYES 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,174,824
Number of Sequences: 28952
Number of extensions: 146439
Number of successful extensions: 429
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)