Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0840
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.19 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.43 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.43 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 372 RSKMPDQPQAGSTPTTTFGQRNNIPDHQPYYEDNL-PSPQPPVYSSPTATT 521
           ++++  + Q G   +   G  +    H+P  E N  PSP P + S+P+++T
Sbjct: 475 QAQLGGERQNGRKDSGYDGAASTAVIHEPVVETNSSPSPNPRIASAPSSST 525


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 261  DDNLEFKRDPDKEGKMYGPYGAP--NYGGQ 344
            DD      + D+ G  YG YGAP  +YG +
Sbjct: 1808 DDPANCAPEEDQYGSQYGQYGAPYDHYGSR 1837


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 499 TPVLQRQHAIRDDTELRLES 558
           TPV  +Q  +++DTEL L++
Sbjct: 14  TPVFTKQKKVKEDTELNLQT 33


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 483  PQPPVYSSPTATTRNPR*YRATTRVR 560
            P P +  +P   T  P  Y AT+R+R
Sbjct: 1171 PSPFMAGAPNVPTILPEQYFATSRIR 1196



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +3

Query: 444 PDHQPYYEDNLPSPQPPVYSSPTATTRNPR*YRATTRVRRIYPESSTSRHY 596
           P H P    +LP+      ++ T TT       ATT    +  + +  RH+
Sbjct: 93  PLHPPASSTSLPATITTTTTTTTTTTATAA-ATATTTATGLIKQETLQRHH 142


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 354 SFLMELRSKMPDQPQAGSTPTTTFGQRNNIPDHQ 455
           SF+ ++ +  P +PQ  + PT+ +    ++ DH+
Sbjct: 240 SFVRKVHATKPPKPQTKTKPTSPY----HVSDHK 269


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 462 YEDNLPSPQPPVYSS 506
           Y + LP PQ P++S+
Sbjct: 301 YSNGLPFPQRPIWSN 315


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 462 YEDNLPSPQPPVYSS 506
           Y + LP PQ P++S+
Sbjct: 301 YSNGLPFPQRPIWSN 315


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +3

Query: 441 IPDHQPYYEDNLPSPQPPVYSSPTATTRNPR*YRATTRVRRIY 569
           I  H  YY+    +  PP Y+         R +++   V  +Y
Sbjct: 523 ISPHHEYYDSKSSTETPPSYNQLNYNENIERFFKSKPPVATMY 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,898
Number of Sequences: 438
Number of extensions: 4980
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)