Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0839
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 27 1.8
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 4.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 5.6
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.6
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 5.6
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 25 7.4
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 25 9.7
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 9.7
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 9.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 435 LPSSPSHCMKRNLRSTPTTNWSVVPSTGNMKPTLPSKL 322
LPS PS R TP T +++P G M P K+
Sbjct: 509 LPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKV 546
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 75 GASKASEFSRLNSAKCNKPKGLLHFAWLKNHIRCR*ELKKIT 200
G+S++ F + S KC + + WLK I C E+ + T
Sbjct: 355 GSSESGVFFEMQSVKCKVAQEIQDHGWLKKLIYCE-EMDRTT 395
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 420 SHCMKRN--LRSTPTTNWSVVPSTGNMKPTLPSKLV 319
SH N + + P N S VP+TGN+K L V
Sbjct: 1095 SHAAHSNNVIGTQPHVNVSAVPNTGNLKDALEGSAV 1130
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 254 NFVSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVV 385
N +I+ K + K V + K K SL+ + LP+EGT F V
Sbjct: 297 NLSAIKSKHLQKIVVLSSKG-KVSLESPMSPSLPIEGTFRSFRV 339
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 386 GVERKFLFIQWDGEDGSKVAVLKELGEVDKDRPNNRINDGKQIL 517
GV+R+ LF+ +G+ + + L E DK + I K++L
Sbjct: 408 GVDRRHLFLLNEGKIAADHPLFNSLSETDKTLRSQSIAQRKKLL 451
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 155 VKKPYTMSVRIEKNHGAPNTGGRAPLG*TXASANFVSIQ 271
+++P S + +H N ++PL + +SAN V+ +
Sbjct: 62 IRQPTESSTHFQSSHSVSNAHNQSPLNQSQSSANPVTFE 100
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 171 RCR*ELKKITEPLTLGEGPHWDERKQALTL*ASKIKLYTNMYQLLKNIQ 317
R + + +K + LT+ PHWD+ A+ L + + + N + L +Q
Sbjct: 96 RSKQKQEKNKDRLTIPRRPHWDQTTTAVELDRMERESFLNWRRNLAQLQ 144
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 351 YQWKVQQTNL*WESNASSFSYSGMER 428
Y W + WES++S FS M+R
Sbjct: 293 YDWMLLNDGKGWESSSSHFSVVAMKR 318
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 264 ASKIKLYTNMYQLLKNI 314
A+K K +T YQLLKNI
Sbjct: 721 ATKKKEFTRQYQLLKNI 737
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 428 DGSKVAVLKELGEVDKDRPNNRINDGKQIL 517
D + +A K LGE + R N R+N K ++
Sbjct: 163 DNNVIAAWKMLGECHRQRGNGRVNIEKCLI 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,915
Number of Sequences: 5004
Number of extensions: 58867
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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