Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0839
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33320| Best HMM Match : p450 (HMM E-Value=0)                        31   0.84 
SB_955| Best HMM Match : p450 (HMM E-Value=0)                          31   0.84 
SB_49169| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_49167| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)           30   1.9  
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_15766| Best HMM Match : Cor1 (HMM E-Value=5.2)                      28   7.8  

>SB_33320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 401

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -2

Query: 378 NWSVVPSTGNMKPTLPSKLVFVCFSVVGTYLCIVLSWMLTKLALAXVHPSGALPPVLGA 202
           N  +V S GN  P    + V    ++    L + LSWML K         G  PP++ A
Sbjct: 315 NGELVTSQGNWLPFSAGRRVCSGEALAKAELFLFLSWMLQKFHFVPEEGEGQTPPIIKA 373


>SB_955| Best HMM Match : p450 (HMM E-Value=0)
          Length = 514

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -2

Query: 378 NWSVVPSTGNMKPTLPSKLVFVCFSVVGTYLCIVLSWMLTKLALAXVHPSGALPPVLGA 202
           N  +V S GN  P    + V    ++    L + LSWML K         G  PP++ A
Sbjct: 428 NGELVTSQGNWLPFSAGRRVCSGEALAKAELFLFLSWMLQKFHFVPEEGEGKAPPIIKA 486


>SB_49169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 520 GRLFAGTMGHEDPPGNFERNKASLYKLGSAK 612
           G L    +GHE+ PG  E+ KA+L ++G+ +
Sbjct: 36  GSLEDEVLGHEEDPGMMEKKKAALKRMGARR 66


>SB_49167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 520 GRLFAGTMGHEDPPGNFERNKASLYKLGSAK 612
           G L    +GHE+ PG  E+ KA+L ++G+ +
Sbjct: 36  GSLEDEVLGHEEDPGMMEKKKAALKRMGARR 66


>SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)
          Length = 194

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 307 KTYKNQFRWE----GWFHITSGRYNRPICSGSRTQVPFHT 414
           K Y   F W     G FHI S      I + +RT++PFHT
Sbjct: 82  KKYYPYFEWPPFCYGLFHILSADVVPEILNHTRTRIPFHT 121


>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 307  KTYKNQFRWE----GWFHITSGRYNRPICSGSRTQVPFHT 414
            K Y   F W     G FHI S      I + +RT++PFHT
Sbjct: 932  KKYYPYFEWPPFCYGLFHILSADVVPEILNHTRTRIPFHT 971


>SB_15766| Best HMM Match : Cor1 (HMM E-Value=5.2)
          Length = 249

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 356 VEGTTDQFVVGVERKFLF--IQWDGEDGSKVAVLKELGEVDKDRPN 487
           V+G T   V+G E + ++    WDG+      VLK+ GE  + R N
Sbjct: 47  VQGATLLTVIGEEAQDVYSTFNWDGDINKIEPVLKKFGEYCEPRRN 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,574,558
Number of Sequences: 59808
Number of extensions: 434064
Number of successful extensions: 852
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)