SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0839
         (664 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D31815-1|BAA06602.1|  299|Homo sapiens SMP-30 protein.                 38   0.032
BC073173-1|AAH73173.1|  299|Homo sapiens regucalcin (senescence ...    38   0.032
AL513366-1|CAI41697.1|  299|Homo sapiens regucalcin (senescence ...    38   0.032
AK223360-1|BAD97080.1|  299|Homo sapiens regucalcin variant prot...    38   0.032
AB032064-1|BAA84082.1|  299|Homo sapiens regucalcin protein.           38   0.032
AB028125-1|BAA78693.1|  299|Homo sapiens regucalcin protein.           38   0.032
BC050371-1|AAH50371.1|  227|Homo sapiens RGN protein protein.          34   0.52 
CR749405-1|CAH18249.1|  313|Homo sapiens hypothetical protein pr...    32   1.6  

>D31815-1|BAA06602.1|  299|Homo sapiens SMP-30 protein.
          Length = 299

 Score = 37.9 bits (84), Expect = 0.032
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 505 QTDPRGRLFAGTMGHEDPPGNFERNKASLYKL 600
           + DP GR FAGTM  E  P   ER++ +LY L
Sbjct: 106 KVDPAGRYFAGTMAEETAPAVLERHQGALYSL 137



 Score = 33.9 bits (74), Expect = 0.52
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +2

Query: 257 FVSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVVGVERKFLFIQWDGEDGS 436
           FV I  K + ++   T++  + ++D  V  +   +  +  +V  +  KF  + W  +   
Sbjct: 31  FVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQ--SGGYVATIGTKFCALNWKEQS-- 86

Query: 437 KVAVLKELGEVDKDRPNNRINDGK 508
             AV+  L  VD D+ NNR NDGK
Sbjct: 87  --AVV--LATVDNDKKNNRFNDGK 106


>BC073173-1|AAH73173.1|  299|Homo sapiens regucalcin (senescence
           marker protein-30) protein.
          Length = 299

 Score = 37.9 bits (84), Expect = 0.032
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 505 QTDPRGRLFAGTMGHEDPPGNFERNKASLYKL 600
           + DP GR FAGTM  E  P   ER++ +LY L
Sbjct: 106 KVDPAGRYFAGTMAEETAPAVLERHQGALYSL 137



 Score = 33.9 bits (74), Expect = 0.52
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +2

Query: 257 FVSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVVGVERKFLFIQWDGEDGS 436
           FV I  K + ++   T++  + ++D  V  +   +  +  +V  +  KF  + W  +   
Sbjct: 31  FVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQ--SGGYVATIGTKFCALNWKEQS-- 86

Query: 437 KVAVLKELGEVDKDRPNNRINDGK 508
             AV+  L  VD D+ NNR NDGK
Sbjct: 87  --AVV--LATVDNDKKNNRFNDGK 106


>AL513366-1|CAI41697.1|  299|Homo sapiens regucalcin (senescence
           marker protein-30) protein.
          Length = 299

 Score = 37.9 bits (84), Expect = 0.032
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 505 QTDPRGRLFAGTMGHEDPPGNFERNKASLYKL 600
           + DP GR FAGTM  E  P   ER++ +LY L
Sbjct: 106 KVDPAGRYFAGTMAEETAPAVLERHQGALYSL 137



 Score = 33.9 bits (74), Expect = 0.52
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +2

Query: 257 FVSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVVGVERKFLFIQWDGEDGS 436
           FV I  K + ++   T++  + ++D  V  +   +  +  +V  +  KF  + W  +   
Sbjct: 31  FVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQ--SGGYVATIGTKFCALNWKEQS-- 86

Query: 437 KVAVLKELGEVDKDRPNNRINDGK 508
             AV+  L  VD D+ NNR NDGK
Sbjct: 87  --AVV--LATVDNDKKNNRFNDGK 106


>AK223360-1|BAD97080.1|  299|Homo sapiens regucalcin variant
           protein.
          Length = 299

 Score = 37.9 bits (84), Expect = 0.032
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 505 QTDPRGRLFAGTMGHEDPPGNFERNKASLYKL 600
           + DP GR FAGTM  E  P   ER++ +LY L
Sbjct: 106 KVDPAGRYFAGTMAEETAPAVLERHQGALYSL 137



 Score = 33.9 bits (74), Expect = 0.52
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +2

Query: 257 FVSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVVGVERKFLFIQWDGEDGS 436
           FV I  K + ++   T++  + ++D  V  +   +  +  +V  +  KF  + W  +   
Sbjct: 31  FVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQ--SGGYVATIGTKFCALNWKEQS-- 86

Query: 437 KVAVLKELGEVDKDRPNNRINDGK 508
             AV+  L  VD D+ NNR NDGK
Sbjct: 87  --AVV--LATVDNDKKNNRFNDGK 106


>AB032064-1|BAA84082.1|  299|Homo sapiens regucalcin protein.
          Length = 299

 Score = 37.9 bits (84), Expect = 0.032
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 505 QTDPRGRLFAGTMGHEDPPGNFERNKASLYKL 600
           + DP GR FAGTM  E  P   ER++ +LY L
Sbjct: 106 KVDPAGRYFAGTMAEETAPAVLERHQGALYSL 137



 Score = 33.9 bits (74), Expect = 0.52
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +2

Query: 257 FVSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVVGVERKFLFIQWDGEDGS 436
           FV I  K + ++   T++  + ++D  V  +   +  +  +V  +  KF  + W  +   
Sbjct: 31  FVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQ--SGGYVATIGTKFCALNWKEQS-- 86

Query: 437 KVAVLKELGEVDKDRPNNRINDGK 508
             AV+  L  VD D+ NNR NDGK
Sbjct: 87  --AVV--LATVDNDKKNNRFNDGK 106


>AB028125-1|BAA78693.1|  299|Homo sapiens regucalcin protein.
          Length = 299

 Score = 37.9 bits (84), Expect = 0.032
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 505 QTDPRGRLFAGTMGHEDPPGNFERNKASLYKL 600
           + DP GR FAGTM  E  P   ER++ +LY L
Sbjct: 106 KVDPAGRYFAGTMAEETAPAVLERHQGALYSL 137



 Score = 33.9 bits (74), Expect = 0.52
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +2

Query: 257 FVSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVVGVERKFLFIQWDGEDGS 436
           FV I  K + ++   T++  + ++D  V  +   +  +  +V  +  KF  + W  +   
Sbjct: 31  FVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQ--SGGYVATIGTKFCALNWKEQS-- 86

Query: 437 KVAVLKELGEVDKDRPNNRINDGK 508
             AV+  L  VD D+ NNR NDGK
Sbjct: 87  --AVV--LATVDNDKKNNRFNDGK 106


>BC050371-1|AAH50371.1|  227|Homo sapiens RGN protein protein.
          Length = 227

 Score = 33.9 bits (74), Expect = 0.52
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +2

Query: 257 FVSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVVGVERKFLFIQWDGEDGS 436
           FV I  K + ++   T++  + ++D  V  +   +  +  +V  +  KF  + W  +   
Sbjct: 31  FVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQ--SGGYVATIGTKFCALNWKEQS-- 86

Query: 437 KVAVLKELGEVDKDRPNNRINDGK 508
             AV+  L  VD D+ NNR NDGK
Sbjct: 87  --AVV--LATVDNDKKNNRFNDGK 106


>CR749405-1|CAH18249.1|  313|Homo sapiens hypothetical protein
           protein.
          Length = 313

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 23/70 (32%), Positives = 29/70 (41%)
 Frame = +2

Query: 287 KYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVVGVERKFLFIQWDGEDGSKVAVLKELGE 466
           K V T  K  K  L    GF    E         +E + +F  +    G    + KELG+
Sbjct: 158 KAVTTKIKTDKRDLIKLKGFCTAKETINRTNRQPIEWEKIFTNYASNKGLISRIYKELGQ 217

Query: 467 VDKDRPNNRI 496
            DK RPNN I
Sbjct: 218 SDKQRPNNPI 227


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,356,083
Number of Sequences: 237096
Number of extensions: 2163819
Number of successful extensions: 3794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3794
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -