Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0839
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 323  SLDGRVGFILPVEGTTDQFVVGVE 394
            ++ GRVGF+ P E     F+ G++
Sbjct: 975  NVQGRVGFVTPFEHR--HFISGID 996


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 526 LFAGTMGHEDPPGNFERNKASLYKL 600
           +   T G+ DPP N E    +LY +
Sbjct: 519 VITSTFGNGDPPENGEAFAQNLYAM 543


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 344 FILPVEGTTDQFVVGVERKFLFIQW 418
           F+L V G     V G    FL+I W
Sbjct: 231 FLLYVSGFITTEVAGTYAIFLYISW 255


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 577 NKASLYKLGSAKDGN 621
           N++++Y LGS ++GN
Sbjct: 2   NESAVYLLGSEEEGN 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,094
Number of Sequences: 438
Number of extensions: 4036
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)