Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0837
         (721 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4M624 Cluster: ABC transporter related; n=3; Petrotoga...    34   3.1  
UniRef50_Q22ZB9 Cluster: DNA polymerase; n=1; Tetrahymena thermo...    33   9.4  

>UniRef50_A4M624 Cluster: ABC transporter related; n=3; Petrotoga
           mobilis SJ95|Rep: ABC transporter related - Petrotoga
           mobilis SJ95
          Length = 597

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 25/65 (38%), Positives = 38/65 (58%)
 Frame = +1

Query: 442 LREKKKTIQYYVSQKLAVKLTLYQV*FSFNAIKEIKHMSDSIISNSCYAQITMVPFVLLF 621
           L+  KK ++Y   QK  + LT   +  S  +   IK++ D II N  ++QI  +PFV+LF
Sbjct: 38  LKYSKKYLKY---QKTPLILTPLLLLVSILSPFLIKYLIDDIIGNHEFSQI--LPFVILF 92

Query: 622 NLVIL 636
            +VIL
Sbjct: 93  TIVIL 97


>UniRef50_Q22ZB9 Cluster: DNA polymerase; n=1; Tetrahymena thermophila
            SB210|Rep: DNA polymerase - Tetrahymena thermophila SB210
          Length = 2298

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = -2

Query: 369  FNTHFLDSESERPDSLSETLNAFLTEN-CNYHYSN-VSLLRISFRRNLCPSFFFRVYGLV 196
            F   F D +  R D     LN  + E  CN  Y   V    + ++ NL  S FF + G  
Sbjct: 832  FFIKFKDGKKARMDYPCSILNYLVYEKYCNRQYQTLVDPANLKYQTNLEMSIFFELDGPY 891

Query: 195  SRTFRPTARLYGRLLGCQTLTLMHSIKETKI 103
                 P AR  G+LL  + +    S K T++
Sbjct: 892  RAMIIPAAREEGKLLKKRYVVFNKSGKLTEL 922


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,772,998
Number of Sequences: 1657284
Number of extensions: 13424355
Number of successful extensions: 29872
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29867
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)