BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0837 (721 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g04560.1 68415.m00464 glycotransferase family protein 19 low ... 30 1.8 At4g24320.1 68417.m03491 hypothetical protein 29 4.1 At5g25390.2 68418.m03012 AP2 domain-containing transcription fac... 28 5.4 At5g25390.1 68418.m03011 AP2 domain-containing transcription fac... 28 5.4 At2g05087.1 68415.m00533 hypothetical protein 27 9.5 >At2g04560.1 68415.m00464 glycotransferase family protein 19 low similarity to lipid-A-disaccharide synthase from Haemophilus influenzae [gi:1694783] and Escherichia coli [SP|P10441]; contains InterPro IPR003835: Glycosyl transferase, family 19 Length = 161 Score = 29.9 bits (64), Expect = 1.8 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 409 GLWSTAPNAVRLREK-KKTIQYYVSQKLAVKLTLYQV*FSFNAIKEIK 549 G+W P+ + R K K+TI V K V +T+ FSF +KE++ Sbjct: 98 GVWELLPHLYKFRVKLKETIDAAVKFKPHVVVTVDSKGFSFRLLKELR 145 >At4g24320.1 68417.m03491 hypothetical protein Length = 395 Score = 28.7 bits (61), Expect = 4.1 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 6/93 (6%) Frame = -2 Query: 360 HFLDSESERPDSLSETLNA----FLTENCNYHYSNVSLLRISFRRNLCPSFFFRVYGLVS 193 H+LD +R +L + ++ + + + S++SLL+ ++ + FF+ Y V Sbjct: 29 HYLDEAVQREKNLKQVISLKDRIVSSPSKSLPLSSLSLLKPLVNLHITAAAFFQKYPSVF 88 Query: 192 RTFRPTAR--LYGRLLGCQTLTLMHSIKETKIH 100 TF+P+ L+ RL Q LTL H +ET IH Sbjct: 89 TTFQPSPSHPLHVRLTP-QALTL-HKEEET-IH 118 >At5g25390.2 68418.m03012 AP2 domain-containing transcription factor, putative AP2 domain containing protein RAP2.4 [Arabidopsis thaliana] EMBL:AF003097 Length = 189 Score = 28.3 bits (60), Expect = 5.4 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -2 Query: 366 NTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSLLRI 250 N+ ++S P SLSE LNA L +NC ++ LR+ Sbjct: 71 NSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRL 109 >At5g25390.1 68418.m03011 AP2 domain-containing transcription factor, putative AP2 domain containing protein RAP2.4 [Arabidopsis thaliana] EMBL:AF003097 Length = 186 Score = 28.3 bits (60), Expect = 5.4 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -2 Query: 366 NTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSLLRI 250 N+ ++S P SLSE LNA L +NC ++ LR+ Sbjct: 68 NSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRL 106 >At2g05087.1 68415.m00533 hypothetical protein Length = 251 Score = 27.5 bits (58), Expect = 9.5 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = -3 Query: 194 LGPLGQLPVFMGGCWVVRL*RSCIQLRKQRFTKTSTRSRYFKCTAVREGC 45 + P+G++P WV R S R FT + +Y KC AV C Sbjct: 145 VSPIGKIP------WVARDWESDFASRYLVFTLKDSMHKYIKCVAVGSSC 188 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,051,979 Number of Sequences: 28952 Number of extensions: 303663 Number of successful extensions: 661 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 646 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 661 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1565336320 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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