Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0837
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04560.1 68415.m00464 glycotransferase family protein 19 low ...    30   1.8  
At4g24320.1 68417.m03491 hypothetical protein                          29   4.1  
At5g25390.2 68418.m03012 AP2 domain-containing transcription fac...    28   5.4  
At5g25390.1 68418.m03011 AP2 domain-containing transcription fac...    28   5.4  
At2g05087.1 68415.m00533 hypothetical protein                          27   9.5  

>At2g04560.1 68415.m00464 glycotransferase family protein 19 low
           similarity to lipid-A-disaccharide synthase from
           Haemophilus influenzae [gi:1694783] and Escherichia coli
           [SP|P10441]; contains InterPro IPR003835: Glycosyl
           transferase, family 19
          Length = 161

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 409 GLWSTAPNAVRLREK-KKTIQYYVSQKLAVKLTLYQV*FSFNAIKEIK 549
           G+W   P+  + R K K+TI   V  K  V +T+    FSF  +KE++
Sbjct: 98  GVWELLPHLYKFRVKLKETIDAAVKFKPHVVVTVDSKGFSFRLLKELR 145


>At4g24320.1 68417.m03491 hypothetical protein
          Length = 395

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
 Frame = -2

Query: 360 HFLDSESERPDSLSETLNA----FLTENCNYHYSNVSLLRISFRRNLCPSFFFRVYGLVS 193
           H+LD   +R  +L + ++       + + +   S++SLL+     ++  + FF+ Y  V 
Sbjct: 29  HYLDEAVQREKNLKQVISLKDRIVSSPSKSLPLSSLSLLKPLVNLHITAAAFFQKYPSVF 88

Query: 192 RTFRPTAR--LYGRLLGCQTLTLMHSIKETKIH 100
            TF+P+    L+ RL   Q LTL H  +ET IH
Sbjct: 89  TTFQPSPSHPLHVRLTP-QALTL-HKEEET-IH 118


>At5g25390.2 68418.m03012 AP2 domain-containing transcription
           factor, putative AP2 domain containing protein RAP2.4
           [Arabidopsis thaliana] EMBL:AF003097
          Length = 189

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 366 NTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSLLRI 250
           N+  ++S    P SLSE LNA L +NC      ++ LR+
Sbjct: 71  NSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRL 109


>At5g25390.1 68418.m03011 AP2 domain-containing transcription
           factor, putative AP2 domain containing protein RAP2.4
           [Arabidopsis thaliana] EMBL:AF003097
          Length = 186

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 366 NTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSLLRI 250
           N+  ++S    P SLSE LNA L +NC      ++ LR+
Sbjct: 68  NSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRL 106


>At2g05087.1 68415.m00533 hypothetical protein
          Length = 251

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 194 LGPLGQLPVFMGGCWVVRL*RSCIQLRKQRFTKTSTRSRYFKCTAVREGC 45
           + P+G++P      WV R   S    R   FT   +  +Y KC AV   C
Sbjct: 145 VSPIGKIP------WVARDWESDFASRYLVFTLKDSMHKYIKCVAVGSSC 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,979
Number of Sequences: 28952
Number of extensions: 303663
Number of successful extensions: 661
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)