Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0836
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.74 
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    26   4.0  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    26   4.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.1  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 255  HITHTN*NLKISIIGISRCKQIILRKLNFIVIVIRVSFSSPLDL 386
            H   T  N+K+SII       ++   LN +V ++ +S+  P+++
Sbjct: 1334 HFEETTYNIKLSIINQLHAMDLLRPLLNTLVEILNLSYDRPINV 1377


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 367 KDTLITITIKFSLRKIICLHLLIPIIDI 284
           K T +  TIKF L+K++CL + +  +++
Sbjct: 146 KITEVKSTIKFQLKKVLCLGVAVGHVEM 173


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 346 TIKFSLRKIICLHLLIPIIDI 284
           TIKF L+K++CL + +  +D+
Sbjct: 153 TIKFQLKKVLCLGVAVGHVDM 173


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 394 LHDKSSGLEKDTLITITIKF 335
           LH+K++GL+K+TL  I  +F
Sbjct: 237 LHNKNTGLDKETLKAIENEF 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,820
Number of Sequences: 5004
Number of extensions: 52999
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)