Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0836
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)                 31   0.59 
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)                 31   0.59 
SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33)             28   7.3  
SB_3480| Best HMM Match : Cytochrom_NNT (HMM E-Value=4)                27   9.7  

>SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
          Length = 639

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 112 DGAGCTHEKTEAFHLRLEVQARTRNERQ 29
           DG GC H+ ++A++ R  +  + R ERQ
Sbjct: 147 DGNGCNHDMSQAYNARQTISRQRRRERQ 174


>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
          Length = 2658

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 112  DGAGCTHEKTEAFHLRLEVQARTRNERQ 29
            DG GC H+ ++A++ R  +  + R ERQ
Sbjct: 2159 DGNGCNHDMSQAYNARQTISRQRRRERQ 2186


>SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33)
          Length = 479

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 75  NASVFSCVQPAPSNYKTLSRQKCNKEYIELWTLIPNKT 188
           N S+++ VQ   +   T     C +EY++  T   NK+
Sbjct: 30  NKSIYNTVQQLQTRVSTTQHNNCKQEYLQHSTTTANKS 67


>SB_3480| Best HMM Match : Cytochrom_NNT (HMM E-Value=4)
          Length = 245

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -2

Query: 279 DSNSYGLYVTSYRGVKSYLV*ATFIFVIKGAFYLVLTSTVRCILC 145
           D  S+ L+ T Y G++     AT IF   G F LV  S ++ ILC
Sbjct: 7   DLVSHTLFFTLYCGIRCI---ATRIFK-NGGFLLVFCSVIKTILC 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,543,031
Number of Sequences: 59808
Number of extensions: 365493
Number of successful extensions: 651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)