Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0836
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81102-3|CAB03201.2|  189|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    27   8.5  
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    27   8.5  
AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...    27   8.5  

>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 268 VWVICYIISRGEKLFGISD-IYLCN*RCVLFGINVHSSMYSLLHF 137
           VW++C   +  + +FGIS  I+ C+  C ++   + +S   LL F
Sbjct: 155 VWILCLFFASKDVMFGISYLIFSCHENCSIYCDILKNSYVGLLIF 199


>Z81102-3|CAB03201.2|  189|Caenorhabditis elegans Hypothetical
           protein M02B1.2 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 436 ITVLLNFQLQPRFILHDKSSGLEKDTLITI-TIKFSLRKIICLHLLIPIIDILRF*FVWV 260
           +TV     L+   I  +K + LE    + + T + S   +ICL ++  ++ ++++   W 
Sbjct: 107 LTVRKRLHLKLEDIWRNKPNCLEGQPCVPLETFRSSENLLICLLVIFLVVQVIQYIASWY 166

Query: 259 ICYIISRGEK 230
           +C   S  EK
Sbjct: 167 LCERRSSQEK 176


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 406 PRFILHDKSSGLEKDTLITITIKFSLRKIICLHLLI 299
           P  + H +S   + D  I  T+KF ++K++CL + +
Sbjct: 104 PSVVTHGESLQSKSDE-IRATVKFQMKKVLCLSVAV 138


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 406 PRFILHDKSSGLEKDTLITITIKFSLRKIICLHLLI 299
           P  + H +S   + D  I  T+KF ++K++CL + +
Sbjct: 73  PSVVTHGESLQSKSDE-IRATVKFQMKKVLCLSVAV 107


>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 406 PRFILHDKSSGLEKDTLITITIKFSLRKIICLHLLI 299
           P  + H +S   + D  I  T+KF ++K++CL + +
Sbjct: 134 PSVVTHGESLQSKSDE-IRATVKFQMKKVLCLSVAV 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,664
Number of Sequences: 27780
Number of extensions: 285220
Number of successful extensions: 553
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)