Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0836
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    28   0.066
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 362 YPYYYYNKVQFAQNNLFTPTNTD 294
           +PYY Y++ Q++Q++L +  N D
Sbjct: 335 FPYYMYSREQYSQSHLISNENRD 357


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = -3

Query: 368 ERYPYYYYNKVQFAQNNLFTPTNTDN*Y 285
           +++ ++Y   +  ++N +FTP N++  Y
Sbjct: 79  QKFLWWYKQGMFLSRNAIFTPLNSEQKY 106


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = -3

Query: 368 ERYPYYYYNKVQFAQNNLFTPTNTDN*Y 285
           +++ ++Y   +  ++N +FTP N++  Y
Sbjct: 79  QKFLWWYKQGMFLSRNAIFTPLNSEQKY 106


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 48  LACTSSLKWNASVFSCVQPAPSNYKTLSRQKCNKEYIELWTLIP 179
           L CT  L      F+ V       KT+  +K N +YI   TL P
Sbjct: 299 LGCTIFLFAAMVEFAFVNTIYRRKKTVPLKKVNSKYILKSTLTP 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,746
Number of Sequences: 438
Number of extensions: 3928
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)