Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0834
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   2.3  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    25   6.9  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.1  

>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 69   FCRE*SPMLFTILHRCNN 16
            FC E  P+L TIL +C+N
Sbjct: 957  FCMEHLPLLITILEKCDN 974


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 355 QHLLVKCWLDLEDFKSHFRNTDNVRKNN 438
           Q L+  C+  L DFKS  ++T+N+ ++N
Sbjct: 591 QILICWCYYRLNDFKSLIQHTNNLLQSN 618


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 382 DLEDFKSHFRNTDNVRKNNFVFSKTQSCDL 471
           +LE+F  H+  T N+   + +    Q CDL
Sbjct: 255 ELEEFSDHYELTKNLELPSSLVECLQDCDL 284


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 410 EIQTMLEKIILYSVKLRAVIYIVITVIYSPKLSQGKNLTKSQLS 541
           EI+        + VKL  +   ++T +YSP     +N+TK  +S
Sbjct: 411 EIEANARLFFFHGVKLYKISSRILTKLYSP---NSRNVTKKHIS 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,442
Number of Sequences: 5004
Number of extensions: 39128
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)