Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0834
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0283 + 6819086-6820270                                           29   3.1  
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316...    27   9.4  
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444...    27   9.4  

>09_02_0283 + 6819086-6820270
          Length = 394

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 160 RAPAFALCCTFXKLSHFVKAMRATLAREVLILS*IITHVIH 38
           R PA  L         +++A+RA L R +L L  ++ HVIH
Sbjct: 15  RVPAPDLAAAALVSREWLRAVRAALRRRMLRLPWLVVHVIH 55


>10_08_0355 -
           17131178-17131268,17131376-17131429,17131521-17131663,
           17131812-17132096,17132168-17132301,17132383-17132556,
           17132639-17132707,17132814-17132878,17133441-17133589,
           17133747-17133989,17134119-17134255,17134340-17134561,
           17134661-17134827,17136680-17136819
          Length = 690

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 362 KCCPMVSMYCIKYVVASLXRRVSFNXNDNLDFFSKXLQ 249
           +CC  +  Y + Y +A +  + +FN     D FSK +Q
Sbjct: 510 RCCGTLEFYNLNYNIAIVSLKKNFNAVRLEDIFSKTVQ 547


>03_02_0801 +
           11343227-11343885,11344018-11344087,11344362-11344433,
           11344511-11344980,11345626-11346598
          Length = 747

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 404 TLEIQTMLEKIILYSVKLRAVIYIVITVIYSPKLSQGKNLT 526
           T  ++TM++   + S +LR VI  ++  +Y      G+N+T
Sbjct: 204 TTTLRTMMKTTTMVSTRLRYVISYILDALYFSLALLGQNMT 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,321,459
Number of Sequences: 37544
Number of extensions: 213777
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)