Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0834
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5008| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_43762| Best HMM Match : Pentaxin (HMM E-Value=1.4e-13)              28   5.5  
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               28   7.3  
SB_29055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_5008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/59 (23%), Positives = 32/59 (54%)
 Frame = +1

Query: 292 NDTLLXREATTYFMQYMETIGQHLLVKCWLDLEDFKSHFRNTDNVRKNNFVFSKTQSCD 468
           +D +    A  YFM+++E  G   +++ WL  ++F+S  +     + +N  ++ +Q+ D
Sbjct: 296 SDIMYNEHAVFYFMEFLEQEGVRHMLEFWLTADNFQSMLK----TKMDNGSYNASQALD 350


>SB_43762| Best HMM Match : Pentaxin (HMM E-Value=1.4e-13)
          Length = 207

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 242 KDSEVFLKRNPSCRXH*MTLSLXEKQLRILCNTWKPSDNIY 364
           KD E+F   N +     + +S  + +  +LC +W+ SD  Y
Sbjct: 62  KDQEIFFGVNNTIEFVDLGVSFRDDKWHMLCWSWRSSDGFY 102


>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 301 LLXREATTYFMQYMETIGQHLLVKCWLDLEDFKSHFRNTDNVRKNNFVFSKTQSCDL 471
           L  +E   Y  +++ T  Q L  KC  D+E  ++   + DN+   +F+ S   +CD+
Sbjct: 305 LKTQEWDPYLCKFLVTSKQRLWDKCVSDVERQRTPIIDVDNLAL-DFISSNVANCDI 360


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 172 RRSHRAPAFALCCTFXKLSHFVK 104
           RR  R  AF LCC F  L+H+VK
Sbjct: 108 RRCMRTSAFGLCCRFI-LAHWVK 129


>SB_29055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 188 TXVDFNNILSSTQFLHDIKDSEVFLK 265
           T  DFN    S QF+  +K++ +FLK
Sbjct: 66  TQADFNKCFESLQFMEGMKETCIFLK 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,250,243
Number of Sequences: 59808
Number of extensions: 276994
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)