Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0834
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g ...    40   0.001
L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z70757-10|CAE18045.2|  117|Caenorhabditis elegans Hypothetical p...    29   3.7  
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    29   3.7  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z46381-3|CAA86516.1|  354|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g
           protein signalingprotein 5 protein.
          Length = 492

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +1

Query: 301 LLXREATTYFMQYMETIGQHLLVKCWLDLEDFKSHFRNTDNVRKNNFVFSKTQSCDLYCD 480
           L+   A +YF+QY+++  +  L+K W+ +E FKS F       +   +       D Y D
Sbjct: 86  LIDSSALSYFIQYLDSTDKLNLIKFWMHVEGFKSSFSEQIQAAQELSLRDAKSIYDKYID 145

Query: 481 HSHLQSKIEPRK 516
                S   PRK
Sbjct: 146 DGSTSSLALPRK 157


>L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical
           protein ZK688.2 protein.
          Length = 632

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = +2

Query: 386 WKISNHTLEIQTMLEKIILYSVKLRAVIYIVITVIYSPKLSQGKNLTKSQLSQHC 550
           W +    L+ +  + K ++  + +  V+Y +++VIY   L+ G+  T  ++ Q+C
Sbjct: 15  WTLFKLLLKWRGSIWKAVILELAVWLVLYGILSVIYRTALNPGQQRTFERIVQYC 69


>Z70757-10|CAE18045.2|  117|Caenorhabditis elegans Hypothetical
           protein ZK287.9 protein.
          Length = 117

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 437 LFFLTLSVFLKCDLKSSKSSQHLTSKCCPMVSMYCIKYVVASLXRRVSFNXND 279
           +F L L +F          S+  T+ C P + ++CIK++  S   R   N ND
Sbjct: 13  VFLLVLCLFDDAFALKCYDSEMQTANCEP-IQLWCIKFINGSTITRGCANVND 64


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.17 protein.
          Length = 1232

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +2

Query: 305 LXEKQLRILCNTWKPSDNIYLLNVG*IWKISNHTLEIQTMLEKIILYSVKLRAVIYIV 478
           L  K+LR L N     D+I+    G +   ++  L++  + +KI+  SVK+  V Y++
Sbjct: 442 LTNKELRKLENINTAVDDIFYAGTGMLLLRNDDGLQLFDVQQKIVTASVKVSKVRYVI 499


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 176 KTSETXVDFNNILSSTQFLHDIKDSEVFLK 265
           KT    + F N+LSS + L  IK+  +FL+
Sbjct: 163 KTENYAISFENVLSSLKLLDSIKNMSLFLE 192


>AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical
           protein K06H6.4 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 200 FNNILSSTQFLHDIKDSEVFLKRNPSCRXH*MTLSLXEKQLRILCNTWKPS 352
           F+N +     L DIKD++        C  H +T+ L    + I  + WKPS
Sbjct: 29  FHNSMEREGLLGDIKDNQSTSTSRNRCYIHVITVLLLLFFIGIRNHNWKPS 79


>Z46381-3|CAA86516.1|  354|Caenorhabditis elegans Hypothetical
           protein M01F1.3 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 328 FMQYMETIGQHLLVKCWLDLEDF 396
           F QYM+   +HLLVK W+  E F
Sbjct: 291 FGQYMQPTKRHLLVKEWVTPEKF 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,375,610
Number of Sequences: 27780
Number of extensions: 220777
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)