Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0834
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica...    28   6.0  
At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.0  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    27   7.9  

>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
            domain-containing protein / RING finger domain-containing
            protein similar to SP|P36607 DNA repair protein rad8
            {Schizosaccharomyces pombe}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain, PF00097: Zinc finger,
            C3HC4 type (RING finger)
          Length = 1277

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +2

Query: 266  RNPSCRXH*MTLSLXEKQLRILCNTWKPSDNIYLLNVG*IWKISNHTLEIQTMLEKI 436
            R+PSC    +  ++ ++   I C    P+D+I+ ++V   WK S+   E+   LEKI
Sbjct: 1069 RSPSCGLCPICRTILKRTELISC----PTDSIFRVDVVKNWKESSKVSELLKCLEKI 1121


>At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase; similar
           to UDP-glucose glucosyltransferase GI:3928543 from
           [Arabidopsis thaliana]
          Length = 487

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -3

Query: 295 HLMXTTTWISFQKXFRIFNVMKKLRTT-*YVIEINXSFRSLPRRSHRAPAFALCCTFXKL 119
           HL     WI   K  R+ ++   +RTT    I +N   R +  RS RA A  L  TF +L
Sbjct: 181 HLDTVIDWIPSMKNLRLKDIPSYIRTTNPDNIMLNFLIREV-ERSKRASAIIL-NTFDEL 238

Query: 118 SH-FVKAMRATL 86
            H  +++M++ L
Sbjct: 239 EHDVIQSMQSIL 250


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 301 ECHLMXTTTWISFQK 257
           ECHL+ + TW+SF K
Sbjct: 574 ECHLLPSKTWLSFLK 588


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,279,862
Number of Sequences: 28952
Number of extensions: 191113
Number of successful extensions: 428
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)