Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0833
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    28   1.3  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.1  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    26   7.1  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.4  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    25   9.4  

>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
 Frame = +3

Query: 87  KVCTMFSDK*NLTVLF*KYGLL--GHAVYFADENILTV----KIFIKMGKLLSLLSRDES 248
           KV T FS   +LT++   + L+  G+  +FAD+N++TV        + G + S++  DES
Sbjct: 217 KVTTEFSQINDLTLIARAHQLVQEGYKYHFADKNLVTVWSAPNYCYRCGNVASVMKVDES 276


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 484 TTVLLQPLLKLQRVVPRLLG-SLVGGAMSPTQHLEQQQALVKQF 612
           T  +L      Q  +P  +G S    A +P+ H++ QQAL  Q+
Sbjct: 533 TLPVLSAAAATQAAMPHTMGPSAHDSASAPSPHMQSQQALPYQY 576


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 332 RRKHRVRSLWARHSRNPRIYHIEATSAMRLVTR 234
           + +H+   LW  H   P IYH+  ++ +  V R
Sbjct: 123 KEEHQDNCLWRLHKFPPDIYHLSVSAELVQVGR 155


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 39  YCLILFDCNRHNL 1
           YC  LF+CN+H +
Sbjct: 739 YCSFLFECNKHEI 751


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 574 QHLEQQQALVKQFAEILEFVLKFDEYKMKTPAIQNDFSYY--RRXFSRGGI 720
           +H + + A +  +AEI+ + L  D Y +  P    D +YY  +R   + G+
Sbjct: 252 EHAKNRNAHI--YAEIVGYGLASDSYHITAPNPNGDAAYYAMKRSLKQAGL 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,290
Number of Sequences: 5004
Number of extensions: 63395
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)