Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0833
(791 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0) 81 8e-16
SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054) 31 1.1
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_57442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12) 29 5.7
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_24520| Best HMM Match : CFEM (HMM E-Value=1.2) 29 5.7
SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2) 28 7.5
SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05) 28 7.5
SB_34331| Best HMM Match : Transposase_21 (HMM E-Value=0.00032) 28 7.5
SB_41936| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_44188| Best HMM Match : Dynein_heavy (HMM E-Value=0.0091) 28 10.0
>SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)
Length = 522
Score = 81.4 bits (192), Expect = 8e-16
Identities = 38/59 (64%), Positives = 43/59 (72%)
Frame = +1
Query: 556 GAMSPTQHLEQQQALVKQFAEILEFVLKFDEYKMKTPAIQNDFSYYRRXFSRGGIINSD 732
G +P +HLE+ QAL KQFAEIL F LKFD+ KM P IQNDFSYYRR SR + NSD
Sbjct: 79 GPDTPIEHLEKHQALAKQFAEILHFTLKFDDLKMTNPNIQNDFSYYRRTLSRRKMANSD 137
Score = 67.7 bits (158), Expect = 1e-11
Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +2
Query: 293 NAAPTMTERDVYDDVQRVLLESEKILEEIQCYKGAGKEIREAIADP-SRISQERAWRAVK 469
+A PT TER+VY+ V+ VL ++++LEE++ Y GA + IREAI++P + QE AWR V
Sbjct: 3 DAQPTETEREVYEVVKGVLDSADRMLEELRSYPGASQAIREAISNPMNEDLQEIAWREVV 62
Query: 470 PLVDKLLCCYNHS 508
PLV KL Y ++
Sbjct: 63 PLVGKLKTFYEYA 75
>SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)
Length = 425
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -2
Query: 304 GRGILEIQEYIISRRRAQCDSSRDKRLNNFPIFINI-FTVRIFSSAKYTAWPKRPYF*NS 128
GRGI ++ I S R + DS ++ +NN P + I + S W K ++
Sbjct: 190 GRGIFDLWNLIDSHRSFEKDSDEERHINNLPNCVGIVISAPSVQSMTCAIWVKMSILVDA 249
Query: 127 TVKFHLSLNIVQT 89
T+ + + ++ T
Sbjct: 250 TLSKGIPVVVILT 262
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 404 EIREAIADPSRISQERAWRAVKPLVDKLL--CCYNHSLSFKGWCPDCW 541
E+ E +DP ++ ++ + + +KL C SLS G CPD W
Sbjct: 498 ELEEIASDPDKVVSASSFEVLHEIAEKLKESLCRVASLSKDGQCPDNW 545
>SB_57442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +2
Query: 248 ALRSSPRYDIFLDFENAAPTMTERDVYDDVQRVLLESEKILEEIQCYKGAGKEIREAIAD 427
A R++ D+ F N A + +R +D + RV+ E Y E+ A+
Sbjct: 148 AFRNATPLDMSAIFPNLAFSAVDR-FHDGLGRVVPGQEGGYSR---YLMLPLEVIPAVKQ 203
Query: 428 PSRISQERAWRAVKPLVDKLLCCYNHSLSFKGW 526
+ + +AW +PL ++ L + S+ ++GW
Sbjct: 204 RALPERHKAWAPYRPLEEERLFAFGLSMDWEGW 236
>SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)
Length = 1020
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 386 YKGAGKE-IREAIADPSRISQERAWRAVKPLVDKLLCCYNHSLSFKGW 526
Y GAGK +A +++ AW + L +K L + S+ ++GW
Sbjct: 528 YPGAGKRPCSDAGCHRHSMARHEAWAPYRQLEEKRLFAFGLSMDWEGW 575
>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2391
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 404 EIREAIADPSRISQERAWRAVKPLVDKLLCCYNHSLSFKGW 526
EI A+ + + AW +PL ++ L + S+ +KGW
Sbjct: 224 EIIPAVKQRALPERHEAWAHYRPLEEERLFAFGGSMDWKGW 264
>SB_24520| Best HMM Match : CFEM (HMM E-Value=1.2)
Length = 813
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 404 EIREAIADPSRISQERAWRAVKPLVDKLLCCYNHSLSFKGW 526
EI A+ + + AW +PL +K L + S+ ++GW
Sbjct: 170 EIIPAVKQRALPERHEAWAPYRPLEEKRLFAFGLSMDWEGW 210
>SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)
Length = 694
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 404 EIREAIADPSRISQERAWRAVKPLVDKLLCCYNHSLSFKGW 526
EI ++ + + AW +PL ++LL + S+ ++GW
Sbjct: 311 EIIPSVKQRALPERHEAWAPYRPLEEELLFAFGLSMDWEGW 351
>SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05)
Length = 290
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 223 NNFPIFINIFTVRIFSSAKYTAWP 152
NNF I +N V +F S+ Y WP
Sbjct: 112 NNFAIQLNTDGVALFKSSSYAIWP 135
>SB_34331| Best HMM Match : Transposase_21 (HMM E-Value=0.00032)
Length = 276
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 223 NNFPIFINIFTVRIFSSAKYTAWP 152
NNF I +N V +F S+ Y WP
Sbjct: 112 NNFAIQLNTDGVALFKSSSYAIWP 135
>SB_41936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 404 EIREAIADPSRISQERAWRAVKPLVDKLLCCYNHSLSFKGW 526
EI A+ + + AW +PL ++ L + S+ ++GW
Sbjct: 34 EIIPAVKQRALPERHEAWAPYRPLEEERLFAFGLSMDYEGW 74
>SB_44188| Best HMM Match : Dynein_heavy (HMM E-Value=0.0091)
Length = 254
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 631 VLKFDEYKMKTPAIQNDFSYYRRXFSRGGIINSDSHRARSSHNREVATDVIVL 789
VLK E ++KT D Y R F G +++SH S +E+ TD+ ++
Sbjct: 137 VLKQQEDELKTRP--KDGCYIRGLFLEGARWDTESHELAESRPKELFTDMPII 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,509,105
Number of Sequences: 59808
Number of extensions: 471972
Number of successful extensions: 1450
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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