Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0833
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23452-11|AAK31548.1|  334|Caenorhabditis elegans Hypothetical p...    64   1e-10
Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical p...    31   0.94 
AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical ...    31   0.94 
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    31   1.2  
AC025716-12|AAK39604.1|  704|Caenorhabditis elegans Hypothetical...    29   5.0  
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    28   6.7  
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    28   6.7  
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p...    28   8.8  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    28   8.8  
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>U23452-11|AAK31548.1|  334|Caenorhabditis elegans Hypothetical
           protein R07G3.8 protein.
          Length = 334

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 28/63 (44%), Positives = 42/63 (66%)
 Frame = +1

Query: 511 KLQRVVPRLLGSLVGGAMSPTQHLEQQQALVKQFAEILEFVLKFDEYKMKTPAIQNDFSY 690
           K++++VP +L  L  G +   + L  +Q++ KQFA ++ FVL FD  KM+T  I ND+SY
Sbjct: 113 KIEKIVPIILWELSSGPLPLEEQLANKQSIAKQFARLIGFVLDFDVVKMRTAQITNDYSY 172

Query: 691 YRR 699
           YRR
Sbjct: 173 YRR 175



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 43/72 (59%)
 Frame = +2

Query: 272 DIFLDFENAAPTMTERDVYDDVQRVLLESEKILEEIQCYKGAGKEIREAIADPSRISQER 451
           +IF+DFENA PT  ER++Y+  + VL + + +L ++  Y G G       A+ +++  + 
Sbjct: 32  EIFVDFENAQPTDEEREIYNMAEEVLNDCDLVLADVSSY-GNG-----CYAERNQLKNDS 85

Query: 452 AWRAVKPLVDKL 487
             +A+K L+ KL
Sbjct: 86  DTQALKVLMTKL 97


>Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = +2

Query: 131 VLKIRSF-GPCSVFCG*EYSDRKDIYKNGKIIE-----SFIA*RVALRSSPRYDIFLDFE 292
           + KIR F   C   CG   SDR+ +Y N + +E     S I       +  +Y I + F 
Sbjct: 265 LFKIRGFVSSCEHGCGRGTSDRQFVYINNRPVEYSRVCSVINDVYKQFNKKQYPIIVLFI 324

Query: 293 NAAPTMTERDVYDDVQRVLLESEKIL 370
           +  P   + +V  D + V+LE E+ L
Sbjct: 325 DVPPEKIDVNVTPDKKTVMLEKERHL 350


>AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = +2

Query: 131 VLKIRSF-GPCSVFCG*EYSDRKDIYKNGKIIE-----SFIA*RVALRSSPRYDIFLDFE 292
           + KIR F   C   CG   SDR+ +Y N + +E     S I       +  +Y I + F 
Sbjct: 265 LFKIRGFVSSCEHGCGRGTSDRQFVYINNRPVEYSRVCSVINDVYKQFNKKQYPIIVLFI 324

Query: 293 NAAPTMTERDVYDDVQRVLLESEKIL 370
           +  P   + +V  D + V+LE E+ L
Sbjct: 325 DVPPEKIDVNVTPDKKTVMLEKERHL 350


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
           protein T05C3.2 protein.
          Length = 1733

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 323 VYDDVQRVLLESEKILEEIQCYKGAGKEI-REAIADPSRISQERAWRAVKPLVDK 484
           +Y  +QR++ +  + L      K  G ++ RE ++D  R   ER W  V   +DK
Sbjct: 597 IYSKMQRLIEDKRQYLMVPSLGKDLGFQVVREWLSDKGRTLSERQWNTVSKALDK 651


>AC025716-12|AAK39604.1|  704|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.15 protein.
          Length = 704

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/83 (27%), Positives = 41/83 (49%)
 Frame = +2

Query: 242 RVALRSSPRYDIFLDFENAAPTMTERDVYDDVQRVLLESEKILEEIQCYKGAGKEIREAI 421
           R++ + + R D+FL   N  P    RD  + V RVL++  + L+++     A  + +   
Sbjct: 385 RMSNKGAIRNDVFL---NNRPFWLARDGTEQVPRVLIQMHRPLKQMHSGNPASIQPKLHR 441

Query: 422 ADPSRISQERAWRAVKPLVDKLL 490
            DP    +E A   +K +VDK +
Sbjct: 442 TDPFLDPKEDALERLK-IVDKAI 463


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
            protein F11C3.3 protein.
          Length = 1963

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +2

Query: 305  TMTERDVYDDVQRVLLESEKILEEIQCYKGAGKEIREAIADPSRISQE 448
            T  +R +  ++Q +  + ++ L E   YK A +  ++AIAD +R+++E
Sbjct: 1733 TSAKRKLEGEIQAIHADLDETLNE---YKAAEERSKKAIADATRLAEE 1777


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
            F11C3.3 protein.
          Length = 1963

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +2

Query: 305  TMTERDVYDDVQRVLLESEKILEEIQCYKGAGKEIREAIADPSRISQE 448
            T  +R +  ++Q +  + ++ L E   YK A +  ++AIAD +R+++E
Sbjct: 1733 TSAKRKLEGEIQAIHADLDETLNE---YKAAEERSKKAIADATRLAEE 1777


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
            protein.
          Length = 1966

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +2

Query: 305  TMTERDVYDDVQRVLLESEKILEEIQCYKGAGKEIREAIADPSRISQE 448
            T  +R +  ++Q +  + ++ L E   YK A +  ++AIAD +R+++E
Sbjct: 1736 TSAKRKLEGEIQAIHADLDETLNE---YKAAEERSKKAIADATRLAEE 1780


>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
            protein R11A8.7b protein.
          Length = 2584

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 574  QHLEQQQALVKQFAEILEFVLKFDEYKMKTPAIQND 681
            QHL+QQQAL +Q   I +F  ++ +++ ++    +D
Sbjct: 2312 QHLQQQQALQQQQQRIQQFQQQYQQHQSQSSQQPSD 2347


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
            protein R11A8.7a protein.
          Length = 2606

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 574  QHLEQQQALVKQFAEILEFVLKFDEYKMKTPAIQND 681
            QHL+QQQAL +Q   I +F  ++ +++ ++    +D
Sbjct: 2334 QHLQQQQALQQQQQRIQQFQQQYQQHQSQSSQQPSD 2369


>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
            R11A8.7d protein.
          Length = 1427

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 574  QHLEQQQALVKQFAEILEFVLKFDEYKMKTPAIQND 681
            QHL+QQQAL +Q   I +F  ++ +++ ++    +D
Sbjct: 1155 QHLQQQQALQQQQQRIQQFQQQYQQHQSQSSQQPSD 1190


>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
            R11A8.7c protein.
          Length = 1405

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 574  QHLEQQQALVKQFAEILEFVLKFDEYKMKTPAIQND 681
            QHL+QQQAL +Q   I +F  ++ +++ ++    +D
Sbjct: 1133 QHLQQQQALQQQQQRIQQFQQQYQQHQSQSSQQPSD 1168


>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
            R11A8.7b protein.
          Length = 2584

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 574  QHLEQQQALVKQFAEILEFVLKFDEYKMKTPAIQND 681
            QHL+QQQAL +Q   I +F  ++ +++ ++    +D
Sbjct: 2312 QHLQQQQALQQQQQRIQQFQQQYQQHQSQSSQQPSD 2347


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
            R11A8.7a protein.
          Length = 2606

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 574  QHLEQQQALVKQFAEILEFVLKFDEYKMKTPAIQND 681
            QHL+QQQAL +Q   I +F  ++ +++ ++    +D
Sbjct: 2334 QHLQQQQALQQQQQRIQQFQQQYQQHQSQSSQQPSD 2369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,322,273
Number of Sequences: 27780
Number of extensions: 357429
Number of successful extensions: 834
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)