Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0833
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   7.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   7.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 514  LQRVVPRLLGSLVGGAMSPTQHLEQQQALVKQFAEIL 624
            +QR++ ++ G  +   +  + H +QQQ   K  A++L
Sbjct: 1082 MQRIIAQIGGKPIAVQIQQSPHQQQQQQQQKILAKVL 1118



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 541  GSLVGGAMSPTQHLEQQQALV 603
            GS+V G   P+Q   QQQ ++
Sbjct: 1222 GSVVLGKQQPSQQQTQQQPII 1242


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 392 LYNTVSLLISSRILTGLFGHRRKHRVRSL 306
           + NTVS+L++  I+   F   R HR+  L
Sbjct: 305 IMNTVSILVTVIIINWNFRGPRTHRMPQL 333


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 235 DKRLNNFPIFINIFTVRIFSS 173
           D RLN   +FI    V +FSS
Sbjct: 71  DTRLNKLAVFIVAGAVGVFSS 91


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 311 SLWARHSRNPRIYHIEATS 255
           SL+AR  +NPR  ++ ATS
Sbjct: 183 SLFARFLKNPRPCNVLATS 201


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 208 FINIFTVRIFSSAKYTAWPKRPY 140
           F++    R+F S +Y    K PY
Sbjct: 307 FLSSLAFRVFQSTQYIRHIKSPY 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,832
Number of Sequences: 438
Number of extensions: 4817
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)