Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0832
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 143 1e-34
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 143 1e-34
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 143 1e-34
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.82
At1g29760.1 68414.m03639 expressed protein 31 0.82
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 2.5
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 3.3
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 3.3
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 3.3
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 29 4.4
At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putativ... 29 4.4
At5g63000.1 68418.m07904 expressed protein 28 7.6
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 7.6
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 143 bits (347), Expect = 1e-34
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
+ I+ QR I+VDGKVRTD TYPAG
Sbjct: 62 ISILMQRHIQVDGKVRTDKTYPAG 85
Score = 126 bits (304), Expect = 2e-29
Identities = 58/95 (61%), Positives = 70/95 (73%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRT
Sbjct: 87 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV 539
IRYPDPLIK ND+I+LD+ KI++ G V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181
Score = 117 bits (281), Expect = 1e-26
Identities = 50/75 (66%), Positives = 63/75 (84%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 688
FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKG
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKG 231
Query: 689 TKAYISLPRGKGXRL 733
TK ++SLP+GKG +L
Sbjct: 232 TKPWVSLPKGKGIKL 246
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 143 bits (347), Expect = 1e-34
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
+ I+ QR I+VDGKVRTD TYPAG
Sbjct: 62 ISILMQRHIQVDGKVRTDKTYPAG 85
Score = 126 bits (303), Expect = 2e-29
Identities = 58/95 (61%), Positives = 70/95 (73%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRT
Sbjct: 87 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV 539
IRYPDPLIK ND+I+LD+ KI++ G V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 117 bits (281), Expect = 1e-26
Identities = 50/75 (66%), Positives = 63/75 (84%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 688
FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKG
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKG 231
Query: 689 TKAYISLPRGKGXRL 733
TK ++SLP+GKG +L
Sbjct: 232 TKPWVSLPKGKGIKL 246
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 143 bits (347), Expect = 1e-34
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
+ I+ QR I+VDGKVRTD TYPAG
Sbjct: 62 ISILMQRHIQVDGKVRTDKTYPAG 85
Score = 126 bits (303), Expect = 2e-29
Identities = 58/95 (61%), Positives = 70/95 (73%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRT
Sbjct: 87 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV 539
IRYPDPLIK ND+I+LD+ KI++ G V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 117 bits (281), Expect = 1e-26
Identities = 50/75 (66%), Positives = 63/75 (84%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 688
FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKG
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKG 231
Query: 689 TKAYISLPRGKGXRL 733
TK ++SLP+GKG +L
Sbjct: 232 TKPWVSLPKGKGIKL 246
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 122 KHSRNLWGPVDGLGAYTPPSLSNIHAL 42
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At1g29760.1 68414.m03639 expressed protein
Length = 526
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 233 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 141
S+LTFP +R CF F F + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 687 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 592
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 687 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 592
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 212 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 96
TF R C + P A +FL+ GKH+R WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 687 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 592
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 551 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 709
G NL + + + R P +V + HT A T NNVF G+GT + +
Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putative /
glutamine phosphoribosylpyrophosphate amidotransferase,
putative / phosphoribosyldiphosphate 5-amidotransferase,
putative similar to amidophosphoribosyltransferase
[Arabidopsis thaliana] GI:469195; contains Pfam profiles
PF00156: Phosphoribosyl transferase domain, PF00310:
Glutamine amidotransferases class-II
Length = 532
Score = 28.7 bits (61), Expect = 4.4
Identities = 28/91 (30%), Positives = 39/91 (42%)
Frame = +2
Query: 398 ECSVLGNA*WPHHPLSRPTYQSQRFHPVRHCNYEDYGFIKFESGNLCMITGGRNLGRVGT 577
EC V+G P SR +Y + H ++H E G + L ITG + V T
Sbjct: 76 ECGVVGIHGDPE--ASRLSYLA--LHALQHRGQEGAGIVAANQNGLESITGVGLVSDVFT 131
Query: 578 IVSRERHPGSFDIVHIKDSTGHTFATRLNNV 670
PG I H++ ST + A+ L NV
Sbjct: 132 ESKLNNLPGDIAIGHVRYST--SGASMLKNV 160
>At5g63000.1 68418.m07904 expressed protein
Length = 201
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 640 SRGVLDVHNVEGAGMSLAGHDGAHAPQVTASRDHTQVPGLKLDESIIF 497
+RGV DV NV GAG + A G P A R + G L ++ F
Sbjct: 110 TRGVHDVFNVVGAGSATAAVFGLIMPGSLAWRARNVLLGSVLGATVCF 157
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 687 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 592
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,995,300
Number of Sequences: 28952
Number of extensions: 411204
Number of successful extensions: 1251
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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