Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0831
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.1  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   5.4  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 319 LFDLLKDNRSMGFAXGTL 266
           L DL+K NR++G A G +
Sbjct: 748 LIDLMKKNRNLGAACGRI 765


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 319 LFDLLKDNRSMGFAXGTL 266
           L DL+K NR++G A G +
Sbjct: 748 LIDLMKKNRNLGAACGRI 765


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 319 LFDLLKDNRSMGFAXGTL 266
           L DL+K NR++G A G +
Sbjct: 748 LIDLMKKNRNLGAACGRI 765


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 319 LFDLLKDNRSMGFAXGTL 266
           L DL+K NR++G A G +
Sbjct: 748 LIDLMKKNRNLGAACGRI 765


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 126  KIEKKCDALKKGNYVDSTHKFN*YYK 203
            +++K     + G YV   H  N YY+
Sbjct: 1095 EVDKPSQPCEPGQYVPDPHNCNAYYR 1120


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 121  YNVKSLTDSVDFKLRNDETFXTHLLLLWFEIIED 20
            Y+   +   V +  RN+ETF   L+  +   IED
Sbjct: 1176 YDGPLIRGEVHYLNRNEETFWNELIEQYLHPIED 1209


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 121  YNVKSLTDSVDFKLRNDETFXTHLLLLWFEIIED 20
            Y+   +   V +  RN+ETF   L+  +   IED
Sbjct: 1176 YDGPLIRGEVHYLNRNEETFWNELIEQYLHPIED 1209


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 390 SPHNRDSQNFIXTFYETRTNVSASSLI 310
           +PH RDS N+I       T  ++S  I
Sbjct: 179 APHLRDSPNYIKPQLHVSTGSTSSPTI 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,209
Number of Sequences: 336
Number of extensions: 2406
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)