Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0831
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    26   4.4  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   7.7  

>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -3

Query: 462 KFNNASPSKFAVXFY*KSQILKLNSPHNRDSQNFIXTFYETRTNVSA 322
           + +  +PS + + +         + PH +  Q+F+  FYET+  + A
Sbjct: 101 RLDRLNPSDYVIVYIPGGYGCSFDFPHAKVVQDFLYRFYETKGIICA 147


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 678 GSSLTWRKVKWCXKRP*TPRDRNIIKVHCMGIFRTTAADENLSSD 544
           G++LT  +  W    P TP DRN    H   +       ENL+SD
Sbjct: 223 GNNLT--RTFWANGNP-TPLDRNAYGTHPFYLEHRYTPSENLNSD 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,046
Number of Sequences: 5004
Number of extensions: 40167
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)