Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0830
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49263| Best HMM Match : Surp (HMM E-Value=1e-28)                    29   1.5  
SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_49263| Best HMM Match : Surp (HMM E-Value=1e-28)
          Length = 641

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 336 DSINFQP--SPNFKHMXKYLKCKFWEESHSPQYHAVTEFPEAEAMEKKGDE 482
           D +NF    +P +KHM KY+K    E+ + P+     E PE +  E + ++
Sbjct: 196 DFLNFDNWLNPYYKHMLKYIK----EKRYEPKIQTQPESPEQQEEESEQED 242


>SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 335 RFY*FSAITEFQTYXKIFKMQVLGGESLAPIS 430
           RF      T+ +TY KIFK+ V GG  +  ++
Sbjct: 626 RFILDKQFTDVETYGKIFKLDVPGGFKIISVA 657


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,865,320
Number of Sequences: 59808
Number of extensions: 230765
Number of successful extensions: 375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)