Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0830
         (486 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53960.1 68416.m05961 proton-dependent oligopeptide transport...    28   2.9  
At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR ...    27   6.7  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    27   8.9  
At1g58400.1 68414.m06644 disease resistance protein (CC-NBS-LRR ...    27   8.9  

>At3g53960.1 68416.m05961 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 602

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 182 NMLHEDLNQRLTKNILKSQ*AERRFVDKILLLLNKRDHTRLD 57
           ++LHE  N+  TK  L S     +F+DK  ++ ++ ++T+ +
Sbjct: 280 SLLHELTNEEYTKGRLLSSSKNLKFLDKAAVIEDRNENTKAE 321


>At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR
           class), putative similar to diesease resistance protein
           rpp8 [Arabidopsis thaliana] gi|3901294|gb|AAC78631
          Length = 1138

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 303 GQTNFQSIGDEDSINFQPSPNFKHMXKYLKCKFWEESHSPQYHAV 437
           G+TNF    + +S N+  S +F+ +  YLK  F   +H P+ + +
Sbjct: 401 GRTNFND-DNNNSCNYVLSLSFEELPSYLKHCFLYLAHFPEDYEI 444


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 278  FYPKKVTQHLEFLSQNNSHYKQSS*IERTST*NMLHEDLNQRLT--KNILKSQ*AERRF 108
            F    VT+H+EF+ +    +++    E T+T      +L  RL   KNIL+S   E RF
Sbjct: 3321 FSADAVTKHVEFVKEYKQDFERHLDPESTTTFPATLAELTARLKKWKNILQSN-VEDRF 3378


>At1g58400.1 68414.m06644 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 900

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 303 GQTNFQSIGDEDSINFQPSPNFKHMXKYLKCKFWEESHSPQYHAV 437
           G+T+F S G+  S+    S +F+ +  YLK  F   +H P+ H +
Sbjct: 387 GRTDF-SDGNNSSVYHVLSLSFEELPSYLKHCFLYLAHFPEDHNI 430


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,419,311
Number of Sequences: 28952
Number of extensions: 177258
Number of successful extensions: 370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)