Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0829
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   4.4  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.4  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    26   5.8  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    25   7.7  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    25   7.7  

>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 398 SNWSYTNNTKLR*LYTIK*NK*LSTLRRQLIFCY 297
           SNW+YTN+  +R    +K ++ + T+ R+L  CY
Sbjct: 286 SNWNYTNDVPMR----MK-HRGMFTIPRELTLCY 314


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 106 FLYYSCKLLVSAGYIIKGNTY 168
           F+YY C L+++  Y++K N Y
Sbjct: 589 FIYYLCILVLATYYVMKHNFY 609


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 682 DDDVCGRYQHACLSPAPSTAARILY 608
           D D    Y H+CL P   T  ++LY
Sbjct: 141 DCDFLVHYGHSCLIPVDQTPIKVLY 165


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 55  FTTNLKIRTSRFFVNCQFLYYSCKLLVSAGYIIKGNTYLFNV 180
           +++N  +    +F+N Q   Y   L +S+GY I+    LF++
Sbjct: 314 YSSNSCLGIPSYFLNPQKARYMLMLAISSGYSIRDIEDLFSI 355


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 55  FTTNLKIRTSRFFVNCQFLYYSCKLLVSAGYIIKGNTYLFNV 180
           +++N  +    +F+N Q   Y   L +S+GY I+    LF++
Sbjct: 314 YSSNSCLGIPSYFLNPQKARYMLMLAISSGYSIRDIEGLFSI 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,396
Number of Sequences: 5004
Number of extensions: 46505
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)