Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0828
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual 54 2e-08
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 27 2.1
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 27 2.1
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 27 3.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.8
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 6.4
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 26 6.4
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 26 6.4
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 25 8.5
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.5
>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 54.4 bits (125), Expect = 2e-08
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 MGYASYLIWEECDGFTEDAVLPLT-LYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGA 432
MGYAS+L ++ +A + LY QL N++W P+F+GL KLA ++ +L+G
Sbjct: 65 MGYASHLAYKADPLMITNASRNGSILYIAQLAANFAWMPLFYGLAKPKLALADLGILTGL 124
Query: 433 AVATTLSFGSVNKTAGLLLIPYLAW 507
++ + TA LIPYLAW
Sbjct: 125 VGWLAKTWWPLAPTASKWLIPYLAW 149
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +2
Query: 65 VMANWPALGSIILPNVGGWANGLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTV 244
+ NW + ++P GW G + + RKD Y+ K+P + PP FGPAWT+
Sbjct: 11 ISKNW--WSASLVPVACGWFIGNSY--KPRKD------YENKKQPKFHPPASAFGPAWTL 60
Query: 245 LYST 256
LY T
Sbjct: 61 LYLT 64
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = -2
Query: 476 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSC----TPYNVR 321
A L T P+ V T +T++S ++K++ +G+ ++L+ SC TP+ +R
Sbjct: 132 APLGTYPHPCVHLTV---NTDVSSPLAIKTYVSSPVGITERLADSCAFVPTPFTIR 184
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 365 VQDQLSSSCTPYNVRGRTASSVKPSHSSQMR 273
+Q LSS T NVR + A+ V+PS S R
Sbjct: 369 IQSTLSSRTTTGNVRTKAANIVRPSSSINRR 399
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = +1
Query: 268 SYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLK 387
++++ ++C+GF+ + L L+++ W P+ +G K
Sbjct: 211 NFILGQDCNGFSLGSFLVRRSDWTSRLMDFLWDPVVYGQK 250
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -2
Query: 605 IKQNIPLSGSLLSLHRFRIVLPDVVRKGAGISGQAKYGMSNKPAVLLTLPNDS 447
+++ P+ SL + HR RI L ++++K G + +L + ND+
Sbjct: 97 LEKERPVFSSLAATHRLRIALLELLKKSGSYKGFEAFVNRTFAVLLRIVVNDN 149
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 210 GVQLGFFNSSYQDFSLLSLRI*PAKNSPLAHPPTFGRII 94
G LG N++Y+ SL I + +P PTFGR+I
Sbjct: 385 GELLGSQNTTYKPVYYHSLLIECCRIAPKILAPTFGRVI 423
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 397 LAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWPDMPAPFLTTS 540
+ F+ +V +G V +S ++ + + YLAW P FLT +
Sbjct: 283 ITFLASTVDTGFMVLVAMSIHNIVEGFTIAYPLYLAWKSRPKAFLTAA 330
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 412 ISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWPDMPAPFLTT 537
I +S + + + VN+T L +P+ PD P F+ T
Sbjct: 793 IDSISSKYLESPVDSQKVNRTPNLQSVPFFRQPDAPKRFVGT 834
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 206 TPPKWVFGPAWTVLYSTWDMPLT 274
TPPK + P + +YST ++PL+
Sbjct: 183 TPPKLGYLPVPSFIYSTGELPLS 205
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/97 (21%), Positives = 45/97 (46%)
Frame = -2
Query: 461 LPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVKPSHSS 282
+P+ S+++ + +S+E S + L+ V S++ N G AS+ + ++ S
Sbjct: 497 MPSPSLLSGSLANSSEHSSSPRLRGSPIHNQPVSSSKSTASLNTNNNGLRASTPEMANIS 556
Query: 281 QMR*EAYPMCCREQSKLDQIPTLGESSLASLTHHTRT 171
E + + PT+G++++ +LT H T
Sbjct: 557 TRS-------SSESNNTNSWPTVGDATIENLTQHEPT 586
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,892
Number of Sequences: 5004
Number of extensions: 75878
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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